Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02614 ATGGAGAACAACCTTGTGGTACTGTGTAAATCAATGCCTCCGGTGGCGTTGCCTTCAAGTAAAGCTATCCAATGTCAATCCTACCCAAAACCTTATAAATCCAGTACCATCTCTTTAACGAAGAGAGGGGACCCATGCTCCACAGATGCTCGCTTAGATTACCTTTGCCGAAATGGGTTGCTGAGAGAAGCCATTGAGGTTCTTGATTCCATGGCTCAACGTAGGAACAAAGTGGAACCCGTGACTTACACTAACTTATTACAGTCTTGCATTGATCGGAATTGTGTTCATCTGGGCAGAGAGCTTCATGCTCGGATGAATGTCGTCAAGGAGCCTGACCTGTTTGTTGAAACTAAATTGGTTAGTATGTATGCGCTATGCGGGTGCATCAAAGAAGCAAGAAAAGTGTTTGATGGAATGCGTGAGAGGAATTTGTTTACTTGGTCTGCTATGATAGGTGCTTGCTGCAGAGAGCGAAGGTGGAGGGAGGTTGTGCAACTGTTCTTCAAAATGATGGTAGACGGGATACTGCCCGATGATTTCTTATTTACTAAGATTTTGGACGCATGTGCGAATTGTGGGGACTTTGAGACAGGGGAATCTATACATTCCCTCGTGGTTCGATGCGGGATGAGTCATCGTTCAATGCATATTACGAATACAATTTTGACTATGTATGCCAAGTGTGGCAAAATAAACGCTGCAAAGAAGTATTTTACTTCCATGGATGAGAGGGACGAAGTGGCATGGAATACCCTTATGTCGGGGTACTGTGAGAAGGGTGAGATTGAACAAGCTCAGCAACTTTTTGATGAAATGAGTGGAGATGGGATTGATCCTGGATTAGTGACCTGGAATATATTGATTGCTGCCTACTCTAAGTTCGGGCATTGCGACGTTGGAATGAATTTAATGAGCAAGATGGCTAGTCGTGGGATTGCACCTGATGTTTATTCCTGGACATCTGTGATATCTGGGGCTGCTCAAAATAACCGAGCAAGTTTGGCTATTGACTTATTTGAAAAGATGCTTCGAGCAGGGCTAGAACCTACTGGCGTAACAATTACAAGTGTCTTATCGGCTTGTGTTTCTCTGAAATCATTGGATACAGGGTTACAATTTCATTCAATTGCTATTAAGATGGGTTTTATTGATAATCTGCTAGTTGGTAACTCTCTGATAGACATGTATTCCAAGTGTGGTGAACTTGAAGCTGCTCAGCGGGTTTTCAATAAAATGTCAGTACGAGATGCATACACTTGGAACTCAATGATCGGAGGATATTTCCAAGCTGGTTACTGTAGTAAAGCCCACGAACTATTCATGAAGATGCAGGAATTGGATGAACCACCTAATGTTGTGACCTGGAATGTGATGATTTCAGGACACTTGCAAAATGGAGATGAGGATCGAGCAATGGATCTTTTCCAAAGAATTGAAAAAGATGGGAAACTTAAGCGGAATACTGCCTCTTGGAATTCTGTAATTTCTGGCTATGCCCATATTGGTCAAAAAGACAAGGCTTTAGGAATATTTAGGAAGATGCAGTCGTTTGAATTCATGCCTAATTCCGTTACAATGATAAGCCTCCTTCCCATTTGTGCAAATTTGATTGCATGGAAGAAAGTCAGAGAGATCCATGGTTATGCATTACGCAGAAATTTGGCATCTGAGCGTTGTGTGGAAAACTCACTCATAGACACTTATGCAAAATCAGGAAATATAGAGTATTCACGAGCTATTTTCGATAGAATGTCATCAAGAGATATCATCTCTTGGAATTCAATTATTGGTGCATATTTACTACACGGCCATGCAGAATCAGCTATTTATCTGTTTAAGCAGATGAAGAAGCTGAGATTTGAGCCAAATAGAGGTACTTTTGCTAGTATTATCCCTGCATACAGTCTAGCTGGAAGGGTCGATGAGGGAAAGCAGGCTTTCTATAGCTTAACCAAGGAATTTCAGATTGTTCCAGGTTTTGAACATTACTCGGCTATGGTGGAGTTGTTTGGCCGTTCAGGTAGAATTGGGGAGGCTATGAGTTTTGTTGATAATTTGCCCATTGAACCACACTCTTCCATATGGAATGCCCTGCTTACTGCCTGCAGGATGCATGAAAATATTAAACTGGCATTATATGCAGCAGAACGCCTCCTTGAGTTGGAGCCTTTTAATTTTCCGATTCATAGTTTAATATCGAAGGCATATGCTTCAATGGGAAACTTTAATGATGCTTCTAATGTGAGAAATCTTGAGAAAGAAAATGCAGCAACAAAACCTCTTGGACACTGCTTGATGGAAAGTAAAAACGTAGTCCACACTTTTGTGACTGGTGATCTGTCTAGACCAGATTCCGGCAGGCTGTGTTCTTGGTTACAGAGATTGGCATCCAATTTTGAAGTAGCTAATTCTTCCACGGGAGTTGTCCTTGAGGAAGAGGACCTGGAAGATGTCAGCGGTGTCCATAGTGAGAAACTTGCTTTGGCTTTTTCTCTTATAGACTCCTGTCATGCACATAAAAGAATACGGATAGTGAAAAACTTGAGAATGTGTTCCGACTGTCACAGGACTGCAAAATATATATCCACGAGACATGGGTGTGATATATATATAAATGATGCTTACTCCTTTCACCATTTTAGAAACGGGAGTTGTTCTTGCAAAGATTACTGGTAG 2679 0.4155 MENNLVVLCKSMPPVALPSSKAIQCQSYPKPYKSSTISLTKRGDPCSTDARLDYLCRNGLLREAIEVLDSMAQRRNKVEPVTYTNLLQSCIDRNCVHLGRELHARMNVVKEPDLFVETKLVSMYALCGCIKEARKVFDGMRERNLFTWSAMIGACCRERRWREVVQLFFKMMVDGILPDDFLFTKILDACANCGDFETGESIHSLVVRCGMSHRSMHITNTILTMYAKCGKINAAKKYFTSMDERDEVAWNTLMSGYCEKGEIEQAQQLFDEMSGDGIDPGLVTWNILIAAYSKFGHCDVGMNLMSKMASRGIAPDVYSWTSVISGAAQNNRASLAIDLFEKMLRAGLEPTGVTITSVLSACVSLKSLDTGLQFHSIAIKMGFIDNLLVGNSLIDMYSKCGELEAAQRVFNKMSVRDAYTWNSMIGGYFQAGYCSKAHELFMKMQELDEPPNVVTWNVMISGHLQNGDEDRAMDLFQRIEKDGKLKRNTASWNSVISGYAHIGQKDKALGIFRKMQSFEFMPNSVTMISLLPICANLIAWKKVREIHGYALRRNLASERCVENSLIDTYAKSGNIEYSRAIFDRMSSRDIISWNSIIGAYLLHGHAESAIYLFKQMKKLRFEPNRGTFASIIPAYSLAGRVDEGKQAFYSLTKEFQIVPGFEHYSAMVELFGRSGRIGEAMSFVDNLPIEPHSSIWNALLTACRMHENIKLALYAAERLLELEPFNFPIHSLISKAYASMGNFNDASNVRNLEKENAATKPLGHCLMESKNVVHTFVTGDLSRPDSGRLCSWLQRLASNFEVANSSTGVVLEEEDLEDVSGVHSEKLALAFSLIDSCHAHKRIRIVKNLRMCSDCHRTAKYISTRHGCDIYINDAYSFHHFRNGSCSCKDYW* 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02614 892 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 417 451 IPR002885 -
Pte1g02614 892 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 560 786 - -
Pte1g02614 892 Pfam PPR repeat family 144 192 IPR002885 -
Pte1g02614 892 Pfam PPR repeat family 589 634 IPR002885 -
Pte1g02614 892 Pfam PPR repeat family 488 532 IPR002885 -
Pte1g02614 892 Pfam PPR repeat family 315 363 IPR002885 -
Pte1g02614 892 Pfam PPR repeat family 246 284 IPR002885 -
Pte1g02614 892 Gene3D Tetratricopeptide repeat domain 482 550 IPR011990 GO:0005515
Pte1g02614 892 NCBIfam pentatricopeptide repeat 454 483 IPR002885 -
Pte1g02614 892 NCBIfam pentatricopeptide repeat 283 317 IPR002885 -
Pte1g02614 892 NCBIfam pentatricopeptide repeat 318 351 IPR002885 -
Pte1g02614 892 NCBIfam pentatricopeptide repeat 563 590 IPR002885 -
Pte1g02614 892 NCBIfam pentatricopeptide repeat 591 624 IPR002885 -
Pte1g02614 892 NCBIfam pentatricopeptide repeat 419 453 IPR002885 -
Pte1g02614 892 NCBIfam pentatricopeptide repeat 146 179 IPR002885 -
Pte1g02614 892 NCBIfam pentatricopeptide repeat 491 523 IPR002885 -
Pte1g02614 892 NCBIfam pentatricopeptide repeat 248 280 IPR002885 -
Pte1g02614 892 Gene3D Tetratricopeptide repeat domain 204 308 IPR011990 GO:0005515
Pte1g02614 892 Gene3D Tetratricopeptide repeat domain 46 105 IPR011990 GO:0005515
Pte1g02614 892 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 49 198 - -
Pte1g02614 892 SUPERFAMILY TPR-like 397 748 IPR011990 GO:0005515
Pte1g02614 892 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 350 IPR002885 -
Pte1g02614 892 FunFam Pentatricopeptide repeat-containing protein 330 453 - -
Pte1g02614 892 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 589 623 IPR002885 -
Pte1g02614 892 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 452 486 IPR002885 -
Pte1g02614 892 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Pte1g02614 892 Pfam PPR repeat 220 245 IPR002885 -
Pte1g02614 892 Pfam PPR repeat 454 483 IPR002885 -
Pte1g02614 892 Pfam PPR repeat 391 414 IPR002885 -
Pte1g02614 892 Pfam PPR repeat 419 447 IPR002885 -
Pte1g02614 892 Pfam PPR repeat 55 74 IPR002885 -
Pte1g02614 892 Pfam PPR repeat 663 685 IPR002885 -
Pte1g02614 892 Gene3D Tetratricopeptide repeat domain 324 481 IPR011990 GO:0005515
Pte1g02614 892 Gene3D Tetratricopeptide repeat domain 561 776 IPR011990 GO:0005515
Pte1g02614 892 Gene3D Tetratricopeptide repeat domain 106 203 IPR011990 GO:0005515
Pte1g02614 892 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 488 522 IPR002885 -
Pte1g02614 892 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 144 178 IPR002885 -
Pte1g02614 892 Pfam DYW family of nucleic acid deaminases 811 892 IPR032867 GO:0008270
Pte1g02614 892 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Pte1g02614 892 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 484 828 IPR046960 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02614 Pte-Chr1 46467433 46471693 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02614 171 893 Glycoside Hydrolase AT3G49170 29.172 4.79e-104 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02614 - - qsa:O6P43_016220 1145.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g02614 1 46467433 46471693 Pte2g00319 2 2439924 2441205 RCT
Pte1g02614 1 46467433 46471693 Pte12g00402 12 3339740 3341446 RCT
Pte1g02614 1 46467433 46471693 Pte1g02614 1 46467433 46471693 RCT