Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02598 ATGTCTCATATTGCACCAATCTCAGAAGCACCTGATCTCTTGACTCAGCGGGGTGGCTGGGCCTACTTGCTGCCGGAGTTGCTTTCTAATATAATTCAAAGGGTGGAAGTTAGTGAGACTTCCTGGCCAGGCCGACGTTCAATAGAGGCTTGTGCTTCAGTTTGCAGGTCTTGGAGAGAGGTGACAAAAAAGGTTGTCCAGACGCCAGGGCGGTGCGGCCGGCTCACCTTTCCTATATCACTGAAGCAGACGAATTCTCGCATAGAAGCCATGCTTACATTGCAAAACTTAGGTCTAACTTCGTCGGGACAAAGTTCAGTATCATTGAAACACCGCCTCCCCGGGACTCCCCAGATCAGTCGAACTGAGTTGTACCCAACACATGCTACTGAGAAGGTGGCCGCTGTGTGTTATGACATAAATGTTCTCCGCACCAGAGGTCCAAGGACAGTATGGTGCATTTTGCACACGATACCTGCACATGCAATCCAAGAAGGCGGCACAGCCCCAACTCCAACTGAACGTAATTCTTGGGGTAGTGATGTTTCATCCGAGGCCATTTCAGATGGAAAGAGACCAACAGTTGAGATTATCTCCAAAAGTATTGACACGCAATCAGAATCAACTCAGCGTAAAAACCTTCCTCTGGTTTTGAAAAATAAAACCCCAAGATGGAACGACCAGCTGCAATGCTGGTGCCTAAATTTCAAAGGACGCATAACAGTACCCTCTGTGAAGAATTTCCAGCTTGTAGCGGCGGCAGAGTCTCATCCAGAGATGTCAGCAACAACACAAGATAGTGTCATAATGCAATTTGGGAAAATTGGAAGAGACATGTTTAGCATGGATTACCAGTACCCTCTTTCAGCCCTCCCAGCCTTCGCAATCAGTTTGAGCAGCTTTGGCTCTAAACCAGCCTGTGAATGA 927 0.4779 MSHIAPISEAPDLLTQRGGWAYLLPELLSNIIQRVEVSETSWPGRRSIEACASVCRSWREVTKKVVQTPGRCGRLTFPISLKQTNSRIEAMLTLQNLGLTSSGQSSVSLKHRLPGTPQISRTELYPTHATEKVAAVCYDINVLRTRGPRTVWCILHTIPAHAIQEGGTAPTPTERNSWGSDVSSEAISDGKRPTVEIISKSIDTQSESTQRKNLPLVLKNKTPRWNDQLQCWCLNFKGRITVPSVKNFQLVAAAESHPEMSATTQDSVIMQFGKIGRDMFSMDYQYPLSALPAFAISLSSFGSKPACE* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02598 308 Pfam F-box domain 25 65 IPR001810 GO:0005515
Pte1g02598 308 Gene3D Tubby Protein; Chain A 101 308 IPR025659 -
Pte1g02598 308 PRINTS Tubby superfamily signature 265 284 IPR000007 -
Pte1g02598 308 PRINTS Tubby superfamily signature 286 308 IPR000007 -
Pte1g02598 308 PRINTS Tubby superfamily signature 130 157 IPR000007 -
Pte1g02598 308 PRINTS Tubby superfamily signature 218 235 IPR000007 -
Pte1g02598 308 PRINTS Tubby superfamily signature 236 252 IPR000007 -
Pte1g02598 308 PANTHER TUBBY-RELATED 17 87 - -
Pte1g02598 308 MobiDBLite consensus disorder prediction 165 190 - -
Pte1g02598 308 SUPERFAMILY Tubby C-terminal domain-like 126 308 IPR025659 -
Pte1g02598 308 ProSitePatterns Tub family signature 2. 293 308 IPR018066 -
Pte1g02598 308 Pfam Tub family 119 302 IPR000007 -
Pte1g02598 308 MobiDBLite consensus disorder prediction 169 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02598 Pte-Chr1 46384236 46385864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02598 20 87 TUB Transcription Factor Family AT1G47270 58.824 2.78e-20 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pte1g02598 Tub 1.2e-55 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02598 K19600 - csv:101222500 263.077