Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02572 ATGATGGCGAGTGGGTTTGGGGAATCAAGAAGCAGGTCATCCCAATTCCCTTCTTGTTCGAGCAATGATAACAATGATGCTGCCAGTTTCGAATGTAATATTTGTTTTGACTTGGCGCAAGATCCCATTGTCACCTTATGTGGCCATCTTTTCTGCTGGCCCTGCCTTTACAAGTGGCTTCATTTTCATTCACAATCCCGGGAATGCCCTGTCTGCAAGGCTCTAGTAGAGGAGAAGAAATTGGTTCCCTTGTATGGAAGAGGTAAGACATCAATTGACCCAAGATCCAAGTCAGTTCCTGGGATCAATATTCCAAATCGTCCAGCTGGTCAAAGACCTGAAACTGCTCCTCCGCCTGAAACAGATCATTTTCCCCAACATGGGTTTGGGTTCACGGGAGGGTTGGGAGGTTTTGCACCAATGGCAACCGCAAGGTTTGGGAATTTTACATTGTCTGCTGCATTTGGTGGTCTGATTCCATCGTTTTTTAACTTTCAAATGCATGGATTTCCTGATGCTTCTGTTTATGGTGCCACGTCTGGGTTTCCTTATGGATTTTCTAATTCCTTTCATGGTGGTCATGCTCATATGTATCATCAGCATATTGGTCAAGGACAACAAGACCACTATCTGAAGCGGCTTCTTATATTTATAGTGTTCTGCGTTGTTCTCGCTGTGATTTGGCAATAG 690 0.4449 MMASGFGESRSRSSQFPSCSSNDNNDAASFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHFHSQSRECPVCKALVEEKKLVPLYGRGKTSIDPRSKSVPGINIPNRPAGQRPETAPPPETDHFPQHGFGFTGGLGGFAPMATARFGNFTLSAAFGGLIPSFFNFQMHGFPDASVYGATSGFPYGFSNSFHGGHAHMYHQHIGQGQQDHYLKRLLIFIVFCVVLAVIWQ* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02572 229 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 10 225 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pte1g02572 229 SMART ring_2 32 72 IPR001841 -
Pte1g02572 229 MobiDBLite consensus disorder prediction 92 120 - -
Pte1g02572 229 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 15 86 - -
Pte1g02572 229 Pfam Zinc finger, C3HC4 type (RING finger) 32 72 IPR018957 GO:0046872
Pte1g02572 229 CDD RING-HC_AtRMA-like 30 74 - -
Pte1g02572 229 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Pte1g02572 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 86 IPR013083 -
Pte1g02572 229 SUPERFAMILY RING/U-box 29 85 - -
Pte1g02572 229 ProSiteProfiles Zinc finger RING-type profile. 32 73 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02572 Pte-Chr1 46074945 46077418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02572 14 212 C3H Transcription Factor Family AT1G19310 67.925 1.13e-95 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02572 K10666 - rcu:8260936 405.601