Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte1g02572 | ATGATGGCGAGTGGGTTTGGGGAATCAAGAAGCAGGTCATCCCAATTCCCTTCTTGTTCGAGCAATGATAACAATGATGCTGCCAGTTTCGAATGTAATATTTGTTTTGACTTGGCGCAAGATCCCATTGTCACCTTATGTGGCCATCTTTTCTGCTGGCCCTGCCTTTACAAGTGGCTTCATTTTCATTCACAATCCCGGGAATGCCCTGTCTGCAAGGCTCTAGTAGAGGAGAAGAAATTGGTTCCCTTGTATGGAAGAGGTAAGACATCAATTGACCCAAGATCCAAGTCAGTTCCTGGGATCAATATTCCAAATCGTCCAGCTGGTCAAAGACCTGAAACTGCTCCTCCGCCTGAAACAGATCATTTTCCCCAACATGGGTTTGGGTTCACGGGAGGGTTGGGAGGTTTTGCACCAATGGCAACCGCAAGGTTTGGGAATTTTACATTGTCTGCTGCATTTGGTGGTCTGATTCCATCGTTTTTTAACTTTCAAATGCATGGATTTCCTGATGCTTCTGTTTATGGTGCCACGTCTGGGTTTCCTTATGGATTTTCTAATTCCTTTCATGGTGGTCATGCTCATATGTATCATCAGCATATTGGTCAAGGACAACAAGACCACTATCTGAAGCGGCTTCTTATATTTATAGTGTTCTGCGTTGTTCTCGCTGTGATTTGGCAATAG | 690 | 0.4449 | MMASGFGESRSRSSQFPSCSSNDNNDAASFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHFHSQSRECPVCKALVEEKKLVPLYGRGKTSIDPRSKSVPGINIPNRPAGQRPETAPPPETDHFPQHGFGFTGGLGGFAPMATARFGNFTLSAAFGGLIPSFFNFQMHGFPDASVYGATSGFPYGFSNSFHGGHAHMYHQHIGQGQQDHYLKRLLIFIVFCVVLAVIWQ* | 230 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte1g02572 | 229 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 10 | 225 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Pte1g02572 | 229 | SMART | ring_2 | 32 | 72 | IPR001841 | - | |
Pte1g02572 | 229 | MobiDBLite | consensus disorder prediction | 92 | 120 | - | - | |
Pte1g02572 | 229 | FunFam | E3 ubiquitin-protein ligase RNF185 isoform X2 | 15 | 86 | - | - | |
Pte1g02572 | 229 | Pfam | Zinc finger, C3HC4 type (RING finger) | 32 | 72 | IPR018957 | GO:0046872 | |
Pte1g02572 | 229 | CDD | RING-HC_AtRMA-like | 30 | 74 | - | - | |
Pte1g02572 | 229 | ProSitePatterns | Zinc finger RING-type signature. | 47 | 56 | IPR017907 | - | |
Pte1g02572 | 229 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 13 | 86 | IPR013083 | - | |
Pte1g02572 | 229 | SUPERFAMILY | RING/U-box | 29 | 85 | - | - | |
Pte1g02572 | 229 | ProSiteProfiles | Zinc finger RING-type profile. | 32 | 73 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte1g02572 | Pte-Chr1 | 46074945 | 46077418 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte1g02572 | 14 | 212 | C3H Transcription Factor Family | AT1G19310 | 67.925 | 1.13e-95 | 277 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte1g02572 | K10666 | - | rcu:8260936 | 405.601 |