Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02553 ATGCAGACAAACGGTTCTGATTCACAACCGCCGCCTGAGCTGAATCAACGTCAGCAACAGCAGACTCCGACTCCGACTCAACCCCCACTGCCACATCATCTGCCTCCACCGCAGCCTTGGATGCCGATGCAGTACCCTGCGGCCGCCATGATAATGCAGCATCAGATGATACCACCTCAGCATTATGTTCCTCCACCGCCACCTCAATCTTACATGCCTTACCACCACTACCATCCTCACACGCCTCACCATCCTCATCAGCATCAAGGATCCAGCAGTGGTGAGAACAAGACGATCTGGGTTGGGGATTTGCATCATTGGATGGACGAGAATTACCTCCACGGCTGCTTTGCTTCAACGGGAGAGATTGCTTCCATCAAGGTTATTCGCAATAAACAAACTGGTTTATCAGAGGGATATGGATTTGTGGAGTTATTTTCGCATGCAACAGCTGAGAAAGTATTACAAAATTACGCTGGAATTTTGATGCCCAACACAGACCAACCATTCCGCTTGAACTGGGCAACATTTAGCACGGGTGACAAGCGTTCAGAGAATGTTCCCGATCTTTCTATTTTTGTTGGGGATTTAGCTGCAGATGTCACTGATAGCATGTTGCATGAAACTTTTGCTAGTAAATATCCATCTCTTAAAGCTGCAAAAGTCGTTTTTGATGCTACAACTGGTCGTTCAAAGGGCTATGGTTTTGTAAGGTTTGGAGATGATAATGAAAGAACACAGGCAATGACTGAAATGAATGGTGTCTACTGTTCAAGCAGACCTATGCGCATTGGTGCTGCAACTCCAAGGAAGTCTTCTGGCTATCAGCAGCAGGGAGGATATGCTTCAAATGGCACTCGTAGCCAAGGATTTCAATCTGATGCAGATTCAAACAACACAACTATATTTGTTGGCGGACTTGATCCCAATGTTACTGATGAAGATCTCAGGCAACCATTCTCACAGTACGGTGAGATAGTTTCTGTGAAAATACCAGCAGGTAAAAATTGTGGCTTTGTACAATTTGCGAACAGAAATAATGCTGAGGAAGCAAAGGACAAATTAAATGGAACAGTAATTGGCAAGCAATCAGTTCGTCTTTCATGGGGCCGAAATCCAGCGAATAAGCAATTTAGAGTTGATTTCGGCAATCAATGGAGTGGGGCATACTATGGAGGTCACGTTTATGATGGTTATGGATATGCTTTGCCACCCCCTTATGATCCAAGTCTATATGCCGCAGCAAGCCCTGCATACGGAGCTTACCCAGTGTACGGCAGCCACCAACAGCAAGTAAGCTGA 1302 0.4578 MQTNGSDSQPPPELNQRQQQQTPTPTQPPLPHHLPPPQPWMPMQYPAAAMIMQHQMIPPQHYVPPPPPQSYMPYHHYHPHTPHHPHQHQGSSSGENKTIWVGDLHHWMDENYLHGCFASTGEIASIKVIRNKQTGLSEGYGFVELFSHATAEKVLQNYAGILMPNTDQPFRLNWATFSTGDKRSENVPDLSIFVGDLAADVTDSMLHETFASKYPSLKAAKVVFDATTGRSKGYGFVRFGDDNERTQAMTEMNGVYCSSRPMRIGAATPRKSSGYQQQGGYASNGTRSQGFQSDADSNNTTIFVGGLDPNVTDEDLRQPFSQYGEIVSVKIPAGKNCGFVQFANRNNAEEAKDKLNGTVIGKQSVRLSWGRNPANKQFRVDFGNQWSGAYYGGHVYDGYGYALPPPYDPSLYAAASPAYGAYPVYGSHQQQVS* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02553 433 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 300 372 IPR000504 GO:0003723
Pte1g02553 433 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 269 IPR000504 GO:0003723
Pte1g02553 433 Gene3D - 178 284 IPR012677 -
Pte1g02553 433 SUPERFAMILY RNA-binding domain, RBD 96 271 IPR035979 GO:0003676
Pte1g02553 433 FunFam Polyadenylate-binding protein RBP47B 178 280 - -
Pte1g02553 433 FunFam Polyadenylate-binding protein RBP47B 96 176 - -
Pte1g02553 433 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 177 IPR000504 GO:0003723
Pte1g02553 433 SMART rrm1_1 191 265 IPR000504 GO:0003723
Pte1g02553 433 SMART rrm1_1 301 368 IPR000504 GO:0003723
Pte1g02553 433 SMART rrm1_1 98 173 IPR000504 GO:0003723
Pte1g02553 433 MobiDBLite consensus disorder prediction 1 41 - -
Pte1g02553 433 MobiDBLite consensus disorder prediction 270 292 - -
Pte1g02553 433 CDD RRM3_NGR1_NAM8_like 299 370 - -
Pte1g02553 433 FunFam Polyadenylate-binding protein RBP47 282 402 - -
Pte1g02553 433 SUPERFAMILY RNA-binding domain, RBD 290 400 IPR035979 GO:0003676
Pte1g02553 433 CDD RRM2_SECp43_like 189 268 - -
Pte1g02553 433 MobiDBLite consensus disorder prediction 24 41 - -
Pte1g02553 433 CDD RRM1_SECp43_like 98 178 - -
Pte1g02553 433 Gene3D - 96 176 IPR012677 -
Pte1g02553 433 Gene3D - 285 378 IPR012677 -
Pte1g02553 433 MobiDBLite consensus disorder prediction 268 292 - -
Pte1g02553 433 MobiDBLite consensus disorder prediction 1 23 - -
Pte1g02553 433 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 86 376 - -
Pte1g02553 433 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 302 364 IPR000504 GO:0003723
Pte1g02553 433 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 165 IPR000504 GO:0003723
Pte1g02553 433 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 261 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02553 Pte-Chr1 45955910 45959555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02553 99 380 Eukaryotic Initiation Factors Gene Family AT4G34110 28.125 1.04e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02553 - - pop:18104937 621.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g02553 1 45955910 45959555 Pte1g02553 1 45955910 45959555 RCT