Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02544 ATGGTGTCTTCACGAATCTCATACGAGGAATGCCGCCGGAAGAGAGTAGAGGAGAACAAGAAGAGACTGGAGGCCCTCAAACTTCCTCTGCTTGCTCAAGCCATTCGCAAACCCACTCATATTCCAAAACCCTCTCCTGTCAAACGTCGATCGGTCCAGAATGAGCAAGTGGTTGTGAGAAGGTCCAATCGTGTTGCCAATATGCCCACTCCTGTTTACACCGAAATAAAAATCGATCGCTTGAGGATACCCAGAAGTATCACGAAGAGAAGGGATTTGTCAAATCGAGTGTATGCCTCAGATGAAGCAAGAGAAGAAGCTCTGGAGAAGGCAGAAAATTTGCAATCTAATCTAGACCCTGGTCATCCCACATTCATTAAATCAATGCTGCAGTCACACGTGAGCGGGGGATTTTGGCTGGGTCTACCAGTCCAGTTCTGCAAGCGGAACCTTCCAAAGAGGGACGAAGAAGTTACACTGGTCGATGAGGACCAAAACGAGTATCCAACAATATATTTGCCTAGAAAGACAGGTCTTAGTGGGGGCTGGAAAGGCTTTGCTGTCGCTCATGACTTAGCCGATGGGGATGCTCTAATTTTCCAACTAATAAGTAGGACAACATTCAAGGTGACAGTGATCGAAAAACATCATTTGACATGGGGAACGAAATCATTTTGCACTAATCATTTTAAATGA 696 0.4555 MVSSRISYEECRRKRVEENKKRLEALKLPLLAQAIRKPTHIPKPSPVKRRSVQNEQVVVRRSNRVANMPTPVYTEIKIDRLRIPRSITKRRDLSNRVYASDEAREEALEKAENLQSNLDPGHPTFIKSMLQSHVSGGFWLGLPVQFCKRNLPKRDEEVTLVDEDQNEYPTIYLPRKTGLSGGWKGFAVAHDLADGDALIFQLISRTTFKVTVIEKHHLTWGTKSFCTNHFK* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02544 231 Gene3D - 99 218 IPR015300 -
Pte1g02544 231 SMART B3_2 125 216 IPR003340 GO:0003677
Pte1g02544 231 CDD B3_DNA 123 213 IPR003340 GO:0003677
Pte1g02544 231 ProSiteProfiles B3 DNA-binding domain profile. 125 216 IPR003340 GO:0003677
Pte1g02544 231 SUPERFAMILY DNA-binding pseudobarrel domain 118 215 IPR015300 -
Pte1g02544 231 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 49 215 IPR044837 -
Pte1g02544 231 Pfam B3 DNA binding domain 125 213 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02544 Pte-Chr1 45905209 45907076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02544 1 213 B3 DNA Binding Superfamily AT3G19184 52.968 4.74e-68 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pte1g02544 B3 6.3e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02544 - - gmx:100794327 300.441
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g02544 1 45905209 45907076 Pte1g02544 1 45905209 45907076 RCT