Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02536 ATGGCTCTTCTGCTTGATAACTTTGAAGGCATTTTTCTCTCCTTGGACACACACAAGTCAGTACCCGCACCCTTCCTCACCAAAACCTACCAACTGGTGGATGATCCCACCACCGATCACATCGTCTCTTGGGGCGAAGATGACACTACCTTCGTCGTTTGGCGTCCACCTGAGTTCGCTCGCGATCTTCTTCCAAACTATTTCAAGCACAACAATTTCTCCAGCTTCGTCCGTCAGCTCAACACTTATGGTTTCAGAAAGATTGTACCAGACAGGTGGGAATTCGCTAACGAGTTATTCAAGAAGGGAGAAAAGCACTTGCTATGTGAGATTCACAGAAGAAAGACCAATCAACCTCAAGTAGCCCTCAACCATCAACCTCATTCCCATTCTTCACTTGGGGTCACCACTCCAGCTTTCTTTCCCTTCTCAAGCAGAGGTAGGATATCTCCACCAGTGGACTCAGACGAGCCTCTCAGCTGGTGTGACTCCTCCCCAATCTCTTCCCCAAGCGGAGGAACTGCAATTTCCACCGTTATAAATGGCGGAACTAACTTCAACAACTCTGTCACTGCGCTCTCGGAAGATAACGAAAGACTACGGCGAAGCAACACAATACTTATGTCTGAGCTTGCACTCATGAAAAAGCTTTATAACGACATAATATATTTTGTGCAGAACCATATGAAGCCCGTTGCGCCAAGCAATGCTTACCCTTCTTCCTTACTATTGTGCAATGCGTCGTCCTTTCCAATCAGCGCTACAAATGGTTCAACGATGCAAAAGTCTATGGGTCAGCGTCTTGGATATTGTCAAGGAACTCACCCTAAACAAGCCAATGTTATCAAGTCTCCAACCCATATTACTTCTCAGAGCTCGGTCATCATTGTCGAAGAGGCAAGCAGCAGCGGCTTCAAGACAAAACTTTTTGGAGTTCCTCTTCATTCCAAGAAAAGGTTGCATCCTGAGTATGGTTCTAACTCCACAAATTTGAAGGCGAATAAGGCTCGGCTGGTCCCGGGAAAGGAAGATTTGGGTCTGAATCTCATGCCTTCGCCCGCTTGTTAA 1068 0.4663 MALLLDNFEGIFLSLDTHKSVPAPFLTKTYQLVDDPTTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANELFKKGEKHLLCEIHRRKTNQPQVALNHQPHSHSSLGVTTPAFFPFSSRGRISPPVDSDEPLSWCDSSPISSPSGGTAISTVINGGTNFNNSVTALSEDNERLRRSNTILMSELALMKKLYNDIIYFVQNHMKPVAPSNAYPSSLLLCNASSFPISATNGSTMQKSMGQRLGYCQGTHPKQANVIKSPTHITSQSSVIIVEEASSSGFKTKLFGVPLHSKKRLHPEYGSNSTNLKANKARLVPGKEDLGLNLMPSPAC* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02536 355 Gene3D - 17 116 IPR036388 -
Pte1g02536 355 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte1g02536 355 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte1g02536 355 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 259 IPR027725 -
Pte1g02536 355 FunFam Heat stress transcription factor B-4 17 115 - -
Pte1g02536 355 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte1g02536 355 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte1g02536 355 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte1g02536 355 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Pte1g02536 355 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02536 Pte-Chr1 45811972 45813190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02536 19 350 HSF AT1G46264 56.609 1.45e-112 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pte1g02536 HSF_DNA-bind 3.9e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02536 K09419 - pop:18104874 496.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g02536 1 45811972 45813190 Pte1g02536 1 45811972 45813190 RCT