Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02530 ATGATGGTTATTAGCATGGAAAGAGAGCAAAACTGGGGTTCAACCCACCGAAGAGAAACCATAAGAACGAACGGCGCAGGCAAAGAGAAGCGGAAGCATCCACATCTCCAGAATCAAACACCAGAGAAACCCTACAGAGGAATCAGGATGAGGAAGTGGGGTAAGTGGGTCGCTGAGATAAGAGAACCAAACAAAAGGTCTAGGATATGGCTCGGTTCCTACACCACCCCAGTCGCAGCTGCGCGTGCTTATGACATCGCCGTTTACTACCTGCGGGGCCCCTCTGCTAAGCTCAACTTCCCGGACTTAATCGTGCAGGAAGATAACAATCTATTGCAAAGTGAAGAAGGGGATATATCCGCCGCCATACGCAGAAGGGCAACCGCAGTCGGTGCTCGGGTGGACGCTCTCCAGTCAGCACTTCCCCCGTCTTCTTCTTCTTCCCACACACAAAGCAGCGATTCCACTAGTCCGAACTGCTCGGACAAACCCGACTTGAACGAGTATCCGAAACCGGAACACTCGGATCAAGAATATTAG 540 0.5148 MMVISMEREQNWGSTHRRETIRTNGAGKEKRKHPHLQNQTPEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDIAVYYLRGPSAKLNFPDLIVQEDNNLLQSEEGDISAAIRRRATAVGARVDALQSALPPSSSSSHTQSSDSTSPNCSDKPDLNEYPKPEHSDQEY* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02530 179 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 20 177 - -
Pte1g02530 179 Pfam AP2 domain 45 93 IPR001471 GO:0003700|GO:0006355
Pte1g02530 179 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
Pte1g02530 179 SUPERFAMILY DNA-binding domain 44 102 IPR016177 GO:0003677
Pte1g02530 179 MobiDBLite consensus disorder prediction 139 163 - -
Pte1g02530 179 FunFam Ethylene-responsive transcription factor 2 43 102 - -
Pte1g02530 179 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
Pte1g02530 179 CDD AP2 45 103 IPR001471 GO:0003700|GO:0006355
Pte1g02530 179 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Pte1g02530 179 PRINTS Ethylene responsive element binding protein signature 83 103 IPR001471 GO:0003700|GO:0006355
Pte1g02530 179 Gene3D AP2/ERF domain 44 102 IPR036955 GO:0003700|GO:0006355
Pte1g02530 179 MobiDBLite consensus disorder prediction 137 179 - -
Pte1g02530 179 MobiDBLite consensus disorder prediction 12 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02530 Pte-Chr1 45754391 45755449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02530 6 154 AP2-EREBP Transcription Factor Family AT1G46768 57.419 1.50e-50 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte1g02530 AP2 5.3e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02530 K09286 - qsa:O6P43_016042 191.045