Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02523 ATGGCTCAGAGTTTCCAACTTGACACGGTTACAGAACAAGAAGAAAAACCCATATCTCTTCTAGACACCCTTTACTGCTCTGACGAACAATGGGGGTCAGAATTTAGAGATGACAACTTCCATCTAGGTTTCGAAGAAGAATGTGGTTCTCGTAATTATGAAAAGATAAGTTCACCTGCTGTAGTTTTGTTAGAAGAGGACCTACACTGGGAAGAGGAAGAGTTAATGAATCTGTTAAGGAAGGAAGAGCAGAACGAGCTGTATGAAGCTAATGAGACAAACCCAGATTTGACTGCGGCGCGCAGAGAGGCCATTGAGTGGATAATGAAGGTCAATGCTCACTTCTCCTTCGCTGCTCTCACTACTATCCTGGCGGTCAGCTACCTTGACCGATTCCTGCAACTGAAGTTCCAACTGCAAGATGGGAATCGTTGGATGGCCCAGCTCGCTGCTGTTGCATGTCTCTCTCTTGCTGCCAAGGTGGAGGAGACCCAGGTTCCTCTACCACTCGACCTCCAAGTAGAAGAGAGTCGATATGTTTTCGAAGCAAAAACGATTAAAAGAATGGAGATCCTCATTCTTTCCACTTTGGGTTGGAAAATGAACCCTGTGACTCCGCTTTCATTTATTGATTACTTCACAAGGAGGCTCGGCTTAAAGGATCATCTTTGTCGGGAGTTTATTAGGAGGTGCAAGAGCATTCTCATCTCTATCATTTCAGATTCCAGATTTTTGCTTTATCGCCCTTCCATACTGGCATTTTCAACGATGCTTCACGTCTTCATTGGCGGGGAGCCTTTCCTTGGTGCTGAATACCAAAACCAGCTTTGGGATATAATGGAAATCGATAAGGACAGGGTAGGTGAGTGCTGGAAACTCATATTGAACGTGGAGACAGCAGAAGGACTGAACAGCGACCAATCCCACAAACGCAAGCTTGGGTCCATTCCCGGTAGCCCAAGTGGTGTGATGGATGTATCATTCAGTTGTGATAGCTCAGATTCTTGGGCAGTGGCATCTGCATCTTCTGTCTCATCCTCACCTGAGCCTCTGTCCAAGAAGGGCAAAGCTCACCAGGACCTGCATTTGCTGAAAGATACAAAAAAAATGTAG 1113 0.4582 MAQSFQLDTVTEQEEKPISLLDTLYCSDEQWGSEFRDDNFHLGFEEECGSRNYEKISSPAVVLLEEDLHWEEEELMNLLRKEEQNELYEANETNPDLTAARREAIEWIMKVNAHFSFAALTTILAVSYLDRFLQLKFQLQDGNRWMAQLAAVACLSLAAKVEETQVPLPLDLQVEESRYVFEAKTIKRMEILILSTLGWKMNPVTPLSFIDYFTRRLGLKDHLCREFIRRCKSILISIISDSRFLLYRPSILAFSTMLHVFIGGEPFLGAEYQNQLWDIMEIDKDRVGECWKLILNVETAEGLNSDQSHKRKLGSIPGSPSGVMDVSFSCDSSDSWAVASASSVSSSPEPLSKKGKAHQDLHLLKDTKKM* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02523 370 SMART cyclin_7 106 195 IPR013763 -
Pte1g02523 370 CDD CYCLIN_AtCycD-like_rpt2 204 294 - -
Pte1g02523 370 Gene3D - 77 292 - -
Pte1g02523 370 PANTHER CYCLINS 73 295 IPR039361 -
Pte1g02523 370 Coils Coil 61 81 - -
Pte1g02523 370 MobiDBLite consensus disorder prediction 353 370 - -
Pte1g02523 370 SMART Cyclin_C_2 204 332 IPR004367 -
Pte1g02523 370 Pfam Cyclin, N-terminal domain 92 202 IPR006671 -
Pte1g02523 370 MobiDBLite consensus disorder prediction 341 370 - -
Pte1g02523 370 FunFam D6-type cyclin 84 202 - -
Pte1g02523 370 Gene3D - 88 202 - -
Pte1g02523 370 CDD CYCLIN_AtCycD-like_rpt1 100 199 - -
Pte1g02523 370 Pfam Cyclin, C-terminal domain 204 329 IPR004367 -
Pte1g02523 370 SUPERFAMILY Cyclin-like 70 202 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02523 Pte-Chr1 45657263 45658799 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02523 20 297 Core Cell Cycle Gene Families AT4G34160 47.122 2.44e-82 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02523 K14505 - tcc:18591134 385.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g02523 1 45657263 45658799 Pte14g00994 14 31551578 31554797 RCT
Pte1g02523 1 45657263 45658799 Pte12g00328 12 2687375 2690422 RCT
Pte1g02523 1 45657263 45658799 Pte2g00372 2 2874872 2876338 RCT
Pte1g02523 1 45657263 45658799 Pte1g02523 1 45657263 45658799 RCT