Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02504 ATGGCTTTGGAAGCTCTTCCATCTCCAACTTCAGCTGTTTCATCGTTTCACTACGATAATGCCGACAGTCACTACCTCGAGTCATGGACAAAGCGGAAGCGTTCCAAGCGTTCAAGGCTTGACCAACCACCGTGCACGGAGGAAGAATACTTAGCTCTCTGTCTTGTCATGCTTGCTAGAGGTGGCGCCGACGTATCCTCTTCTCCATTCACACTGAGTCCTCCTATCCTGTTTGGACGTGACCTGTCGACAGCTGCTACTCCCAATCTCACTTTCAAGTGCGCTGTCTGCAGCAAAACCTTCTCATCCTACCAGGCTCTCGGAGGACATAAAACCAGCCATAGAAAACGATCCAGCGGCGGCGAAGACCCATCCTTTTCATCTGCTATGACCACGACGACTGGAAACACCCCTGTCACTGCATCAAGCAACGGTGCTAGGATTCATGAGTGTTCCATATGTCACAAGTCGTTCCCAACCGGTCAGGCCTTGGGCGGACACAAGCGCCGCCACTTTGAAGGTGGCAGTGGCGGTGCCAATAACAACGGCAGCGGCAACAGCCATATCACAGCCTCGGAAGGTGGGAGTTCTACGCACGCAGTCAGTCGGAGCCAGCAGCGTGACTTCGATCTAAATATGCCAGCCATGCTGGAATTCTCGGCCAAGTTCTCTATGTCGGGGGACGAGGAGGTTATGAGCCCTCTGCCACAGAAGAAACCTCGATTATATGGAACCCAAGATTGA 744 0.5282 MALEALPSPTSAVSSFHYDNADSHYLESWTKRKRSKRSRLDQPPCTEEEYLALCLVMLARGGADVSSSPFTLSPPILFGRDLSTAATPNLTFKCAVCSKTFSSYQALGGHKTSHRKRSSGGEDPSFSSAMTTTTGNTPVTASSNGARIHECSICHKSFPTGQALGGHKRRHFEGGSGGANNNGSGNSHITASEGGSSTHAVSRSQQRDFDLNMPAMLEFSAKFSMSGDEEVMSPLPQKKPRLYGTQD* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02504 247 ProSiteProfiles Zinc finger C2H2 type domain profile. 149 171 IPR013087 -
Pte1g02504 247 MobiDBLite consensus disorder prediction 177 205 - -
Pte1g02504 247 Gene3D Classic Zinc Finger 90 171 - -
Pte1g02504 247 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 31 215 IPR044653 GO:0003700
Pte1g02504 247 MobiDBLite consensus disorder prediction 108 142 - -
Pte1g02504 247 MobiDBLite consensus disorder prediction 122 142 - -
Pte1g02504 247 MobiDBLite consensus disorder prediction 225 247 - -
Pte1g02504 247 SUPERFAMILY beta-beta-alpha zinc fingers 92 171 IPR036236 -
Pte1g02504 247 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 119 IPR013087 -
Pte1g02504 247 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Pte1g02504 247 SMART c2h2final6 92 114 IPR013087 -
Pte1g02504 247 SMART c2h2final6 149 171 IPR013087 -
Pte1g02504 247 ProSitePatterns Zinc finger C2H2 type domain signature. 151 171 IPR013087 -
Pte1g02504 247 MobiDBLite consensus disorder prediction 162 205 - -
Pte1g02504 247 Pfam C2H2-type zinc finger 92 116 - -
Pte1g02504 247 Pfam C2H2-type zinc finger 149 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02504 Pte-Chr1 45537321 45538503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02504 1 242 C2H2 Transcription Factor Family AT1G27730 47.809 9.30e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte1g02504 zf-C2H2_6 3.5e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02504 - - qsa:O6P43_015998 259.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g02504 1 45537321 45538503 Pte1g02504 1 45537321 45538503 RCT