Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02500 ATGGGAACGGAGAGTCCAGTGAATTTCACTTATCTGGGCCACACTTTCAGTAATCTGAGTGTGAAAGACGACTCTTGCTCTGCCTTTAGCGACTATAACAGTGACAGATCCGGTGAATTCCCGACAGCTTCTTCCGAGAGCCGGAAGCTCTTGATAGCTTGCACCTCAGAGAATTCTGACGATTTAATGCGTCGTCTGGTCTCTGACCTGGAGTCCTGTTCGATTGACGAGCAAAAGCAAGCAGCCCTGGAGATCAGATTACTCGCTAAGAACAAACCAGAGAACCGATTAAAGATAGCTGAAGCAGGCGCTATCAAACCATTAATCTCACTTCTATTGTCTCCTGATCCTCAGCTCCAAGAGTACGCTGTCACGGCGATTCTAAATATTTCACTGTGCGACGAGAACAAAGAAATCATAGCTTCATCGGGAGCCATTAAACCTCTGGTCAGAGCTCTCAAAACAGGTACTTCTACTGCCAAAGAGAACGCAGCCTGTGCTTTGCTTCGCCTCTCGCAGCTCGAGGAGAACAAGGTAGCGATTGGCCGGTCGGGAGCGATTCCGCTTCTGGTGAACCTTCTGGAGACCGGAGGATTCCGAGGGAAGAAGGACGCTTCGACGACACTTTACTCTCTCTGTTCTGTAAAGGAGAACAAGATCAGGGCCATGAATTCAGGAATCATGAAGACGTTGGTAGAATGGATGGCCGATTTTGAGTCAAACATGGTGGACAAGTCAGCGTATATATGCAACTTGCTGGTAACGATACCGGAGGCGATAACGTCGTTGGTTGAAGAAGGCGGTATTCCGGTTCTAGTGGAAATCATAGAGGCGGGAACGCAGAGACAGAAGGAGATGGTGGTGTCGATATTGTTGCAGGTCTGTGAGGACAGTGTGGCCTACCGTACGATGGTGGCCCGCGAAGGAGCGATTCCTCCTTTAGTGGCTTTGTCGCAATCTGGGAATTGCAGCAATCGCTCTAAGCAAAAGGTGAGAAGCTTCAAAAGCAAACCACAAATGAAATGCCCTTCCTTCCCCGTCGTAAAATGCACTTGTCAGTTGTCACACAAGGTCGACGGTCACTGGCGATGGACGTGGCAGATTCTTTTTTGTAAAATGATTTAA 1125 0.4862 MGTESPVNFTYLGHTFSNLSVKDDSCSAFSDYNSDRSGEFPTASSESRKLLIACTSENSDDLMRRLVSDLESCSIDEQKQAALEIRLLAKNKPENRLKIAEAGAIKPLISLLLSPDPQLQEYAVTAILNISLCDENKEIIASSGAIKPLVRALKTGTSTAKENAACALLRLSQLEENKVAIGRSGAIPLLVNLLETGGFRGKKDASTTLYSLCSVKENKIRAMNSGIMKTLVEWMADFESNMVDKSAYICNLLVTIPEAITSLVEEGGIPVLVEIIEAGTQRQKEMVVSILLQVCEDSVAYRTMVAREGAIPPLVALSQSGNCSNRSKQKVRSFKSKPQMKCPSFPVVKCTCQLSHKVDGHWRWTWQILFCKMI* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02500 374 Pfam Armadillo/beta-catenin-like repeat 134 172 IPR000225 GO:0005515
Pte1g02500 374 Pfam Armadillo/beta-catenin-like repeat 176 214 IPR000225 GO:0005515
Pte1g02500 374 Pfam Armadillo/beta-catenin-like repeat 93 131 IPR000225 GO:0005515
Pte1g02500 374 SUPERFAMILY ARM repeat 60 324 IPR016024 -
Pte1g02500 374 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 103 145 IPR000225 GO:0005515
Pte1g02500 374 PANTHER U BOX DOMAIN-CONTAINING 63 333 - -
Pte1g02500 374 Gene3D - 254 356 IPR011989 -
Pte1g02500 374 FunFam U-box domain-containing protein 4 177 343 - -
Pte1g02500 374 Gene3D - 41 249 IPR011989 -
Pte1g02500 374 SMART arm_5 256 296 IPR000225 GO:0005515
Pte1g02500 374 SMART arm_5 298 356 IPR000225 GO:0005515
Pte1g02500 374 SMART arm_5 92 132 IPR000225 GO:0005515
Pte1g02500 374 SMART arm_5 174 214 IPR000225 GO:0005515
Pte1g02500 374 SMART arm_5 133 173 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02500 Pte-Chr1 45510749 45513683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02500 27 331 U-box Gene Family AT2G23140 45.714 4.92e-76 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02500 - - cpap:110811338 511.146