Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02488 ATGCCTATGTATCAGCCATCATCTACTGGGAGAGGAGATGCGGATATGAATCTGGATTTGAGCGGTGGTGGACAAATTCTCGATCTGGAAACCGCTGTCAAAGATGGGGTCTTTGATGATGGAAATGGTTTGAACTGTGTTGGTGGTTTTGTAGGGAAATTGAATCTGAAGACGATGATTGAGGAGCTAGAGTCTATTGATGTGCCTTCTGTGTTCATTTGTCCAATCTCTTTGGAACCAATGCAAGACCCAGTAACTCTTTGTACGGGTCAGACGTATGATAGATCCAACATTCTCAAATGGTTTGCTCTTGGTCACTGCACTTGTCCGACAACAATGCAAGAGCTTTGGGATGATTCTGTTACGCCCAACAAGACTCTTCACCAACTCATAAATAGTTGGTTCTCTCAAAAGTACCTGGCCATGAAAAAGAGGTCCGAGGATGTGCAAGGAAGAGTCTTGGAACTCCTAGAGACGCTCAAGAAGGTAAAGGGTCAAGCAAGAATACGAGCCCTGAAGGAGATGAGGCAGGTTGTCGCTGCTCATTCGTCAACCAGGCAAACAATAGCTGAGAATGGTGGGCTTTCTCTAATTTCCTCTTTGTTAGGTCCTTTCACTTCACACGCAGTTGGCTCCGAAGCTATTGGTATTTTAGTGAATTTTGATATCAATTCAGAATTGAGGAAGAATCTCATCCAACCGGCCAAGATGTCAGTGGTAGTGGATGTTATGAATGAGGGAATGATAGAGACCAAAATCAATTGTGCCAAGTTGATCCATATATTGATAGAGGGGAATGATTCAATAACGGTTACTATATCAAGCCTAAGTCTGCTGGTTGGGTTGTTGAGGTTAGTGAAGGACAGGAGATATTCGATTGGGGTATTAACTGGACTTAAGCTATTTAAAACTATCTGTTCTCAGTCTCAGGAATCAATTAGAAGCTCAGTTGTGCGCATAGGAGCGGTTTCACATTTTATTACTCTATTGCCAAGCTTGAATGATGATTGCTTAGAGATAGCCCTTTGTATTCTAGATAGCCTATCAACTCTTACCGAGGGAGTACAGGCGATGAGAGATTGTCCAAACTTCATACCAATTGCTGTGAAGTTATTGATGAAAGTTTCAGAAAGCTGCACGGAGTTTGCTTTGTCGATCTTGTGGTCTGTATGCAAACTCGCTCCTGAAGAGTGTGCATCACAAGCTGTAGAGGCTGGTTTGGCAGCAAAGCTGCTACTTGTAATTCAGAGTGGTTGCAATCCTTTGTTAAAGCAAAGGTCAGCTGAGCTCTTAAAATTGTGTAGCTTGAATTATTCCGCTTCCCTTTTCATTTCAAAATGTAAGCTTACATCAACAATGCAATGA 1365 0.4242 MPMYQPSSTGRGDADMNLDLSGGGQILDLETAVKDGVFDDGNGLNCVGGFVGKLNLKTMIEELESIDVPSVFICPISLEPMQDPVTLCTGQTYDRSNILKWFALGHCTCPTTMQELWDDSVTPNKTLHQLINSWFSQKYLAMKKRSEDVQGRVLELLETLKKVKGQARIRALKEMRQVVAAHSSTRQTIAENGGLSLISSLLGPFTSHAVGSEAIGILVNFDINSELRKNLIQPAKMSVVVDVMNEGMIETKINCAKLIHILIEGNDSITVTISSLSLLVGLLRLVKDRRYSIGVLTGLKLFKTICSQSQESIRSSVVRIGAVSHFITLLPSLNDDCLEIALCILDSLSTLTEGVQAMRDCPNFIPIAVKLLMKVSESCTEFALSILWSVCKLAPEECASQAVEAGLAAKLLLVIQSGCNPLLKQRSAELLKLCSLNYSASLFISKCKLTSTMQ* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02488 454 Gene3D - 147 297 IPR011989 -
Pte1g02488 454 Gene3D - 298 445 IPR011989 -
Pte1g02488 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 146 IPR013083 -
Pte1g02488 454 SMART Ubox_2 71 134 IPR003613 GO:0004842|GO:0016567
Pte1g02488 454 SUPERFAMILY ARM repeat 155 437 IPR016024 -
Pte1g02488 454 Pfam U-box domain 68 138 IPR003613 GO:0004842|GO:0016567
Pte1g02488 454 CDD RING-Ubox_PUB 69 121 IPR045210 -
Pte1g02488 454 PANTHER WDSAM1 PROTEIN 62 440 IPR045185 GO:0061630
Pte1g02488 454 ProSiteProfiles U-box domain profile. 67 141 IPR003613 GO:0004842|GO:0016567
Pte1g02488 454 SUPERFAMILY RING/U-box 62 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02488 Pte-Chr1 45399668 45401759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02488 1 455 U-box Gene Family AT5G65920 63.020 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02488 - - qsa:O6P43_015965 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g02488 1 45399668 45401759 Pte1g02488 1 45399668 45401759 RCT