Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02481 ATGGATTTTGGGGCTGTGGGTTTAGAGGGCTTGGTGGGTTCAGACACTGGTTTCACTTCTCTTTCTTCAGATCCTGAGACAAAGCAGAAATGGTACGGATCTGAATCCCTTAAGCAGGAGAGATCTGGCGCCACTGAAGATGACTGGAGAAGCTCTAAACTGGCTAAAACTGACGACTTCACCTCCGCGGCGATGCTGTTTCAGCAAAGAAACACTTCAACACTAAGATCTAGCGGCCCTCTTTTCTCTGATGCACAGCCACAACAACACATGCTGAGCTTCGCTTCTCCCGTACCAGAAGCACAGAATGCTGCATTGCCTTACTCATACCACACATTATCCGCTTACACTAGAAATGCAGGCTTTAGTTCTGCAAGTTTAAATGGTGCAAGCATGCACGGAGGTCTATCAGGGGCTAGGGGACCATTCACTCCATCTCAGTGGCTGGAGCTGGAACACCAAGCCTTGATCTACAAGTACATCACTGCGAACGTGCCTGTACCTTCTAATCTACTTATTCCCATCAGAAAAGCGCTTGATTCCGCTGGTTTCTGTAGTTACTCAGGCGGACTTCTGAGACACAGCCCATTGGGATGGGGGTCTTTCCATCTGGGATTCTCGAGCAACACCGATCCTGAGCCTGGAAGGTGTCGAAGAACAGATGGAAAGAAATGGCGTTGCTCAAGAGATGCCGTTCCTGATCAGAAATACTGTGAGCGACATATGAACAGGGGCCGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCAGGCCATGCCGTCACTGGAACCACCACTACTACCACTTCCAAGCTGATGCCAAATACTTCCTCATCTGTCTCGGTGATGTTAGGTGGCGCAAACAACAGCCTCTCCTATGCACACCAACAAGCTAAGACTCTGCAGCCCAGTGCATCTAATAATGGTTCTACGAGAGGCAACGTCAACGAGATGCTTGTGAATAACAAAGTGAATGCGAATGAGAGCAAGCAAGATGCTCCAGCACTTTCGATGTTCCCTCCAACCATGGAGCTGAAATCCAAGTTGAATTCCTTTATACTTCAGGAGCCACAATTGCCATATGAAGACACACCAAGGTCTCAGTTTGGTCTTGTGACTTCGGACTCTTTGATTAACCCCTCGCATAAGAGCTCTATCCTAATGAGCAGCAACAAAATTGGCTCGTCTTCTCAGAGTCCCTCTGACCAAAACACTGAGACTCCCCAATCCCTGAGGCATTTCATTGATGACTGGCCCAAGAATCAGTCTGATCGCCGCAATCTTTCATGGCAAGATGTAGATAGGACTCAACTGTCCATTTCAATCCCCATGGGCTCCTCTGATTTCTTGCCATCCACCTCCTCTGCCGCCAATGACAAGCTTACACTATCACCCCTGAGACTGTCCAGAGAGTTGGAGCCAATGCAGAAGGGTTTGGGATTGGGAGGCAGTAGGCAAGCTAATTGGATCCCAATTAGTTGGGAGAACTCACTTGGGGGTCCTCTAGGAGAGGTTTTGCACCATAGTAATAACAATGGAAATGATTGTATGAAGAACACTTCTGCACTTAACCTCGTGAGTGATGGTTGGGGCAGTAGCTCTCCTTTGGGGTCATCTCCCACGGGGGTCCTGCAGAAGACTACATTCAGATCTCTGTCAAATAGCAGTGCTGGAAGTAGCCCAAGGGCAGACACCAAAACCTATGACGGGCCAAGCTTGTGCAATGATCTGCTCGGTTCAAGTCTTCGAAATTCTTCCTCTCTGCCTGCCTTGTAA 1776 0.4876 MDFGAVGLEGLVGSDTGFTSLSSDPETKQKWYGSESLKQERSGATEDDWRSSKLAKTDDFTSAAMLFQQRNTSTLRSSGPLFSDAQPQQHMLSFASPVPEAQNAALPYSYHTLSAYTRNAGFSSASLNGASMHGGLSGARGPFTPSQWLELEHQALIYKYITANVPVPSNLLIPIRKALDSAGFCSYSGGLLRHSPLGWGSFHLGFSSNTDPEPGRCRRTDGKKWRCSRDAVPDQKYCERHMNRGRHRSRKPVEGQSGHAVTGTTTTTTSKLMPNTSSSVSVMLGGANNSLSYAHQQAKTLQPSASNNGSTRGNVNEMLVNNKVNANESKQDAPALSMFPPTMELKSKLNSFILQEPQLPYEDTPRSQFGLVTSDSLINPSHKSSILMSSNKIGSSSQSPSDQNTETPQSLRHFIDDWPKNQSDRRNLSWQDVDRTQLSISIPMGSSDFLPSTSSAANDKLTLSPLRLSRELEPMQKGLGLGGSRQANWIPISWENSLGGPLGEVLHHSNNNGNDCMKNTSALNLVSDGWGSSSPLGSSPTGVLQKTTFRSLSNSSAGSSPRADTKTYDGPSLCNDLLGSSLRNSSSLPAL* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02481 591 MobiDBLite consensus disorder prediction 15 50 - -
Pte1g02481 591 MobiDBLite consensus disorder prediction 15 30 - -
Pte1g02481 591 Pfam WRC 212 254 IPR014977 -
Pte1g02481 591 ProSiteProfiles WRC domain profile. 211 255 IPR014977 -
Pte1g02481 591 ProSiteProfiles QLQ domain profile. 142 177 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pte1g02481 591 SMART QLQ_2 141 177 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pte1g02481 591 MobiDBLite consensus disorder prediction 550 566 - -
Pte1g02481 591 MobiDBLite consensus disorder prediction 31 50 - -
Pte1g02481 591 PANTHER GROWTH-REGULATING FACTOR 5 109 448 IPR031137 GO:0005634|GO:0006351|GO:0032502
Pte1g02481 591 MobiDBLite consensus disorder prediction 258 278 - -
Pte1g02481 591 MobiDBLite consensus disorder prediction 550 571 - -
Pte1g02481 591 Pfam QLQ 142 176 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pte1g02481 591 MobiDBLite consensus disorder prediction 244 278 - -
Pte1g02481 591 MobiDBLite consensus disorder prediction 387 409 - -
Pte1g02481 591 MobiDBLite consensus disorder prediction 295 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02481 Pte-Chr1 45337047 45340487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02481 38 549 GRF Transcription Factor Family AT2G22840 41.728 1.46e-100 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Pte1g02481 WRC 1.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02481 - - qsa:O6P43_015955 778.474