Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02473 ATGGAGGAATATAACCATCACCTGAACGTGGCCTCAGCTTCTAGAGGCAATTTCTTGTATTCTTCTTCTGCTGCTGCTGTTGCTTATGGTAGAAGCAGCAGTGGAGGCAGTTCGAACGTGGGAAATCATCATCAACATCAACATGCCCAGATTCCCATGGACACCTTTCATCTGCAGACGGGTAGTAGATCAGAACAGTGCTTTCAATCAGATCAAGCGCTTTCAACTGTGAAGATCGAAGCGAATACTTCGCAGCCTGCTCAGATTTTTCCCTACGCTTTGATGAGAGCGAATCAACATCATCATCAAGGAGTACTAAATGAGAGTACTGGAGACGTTGAAGCCATGAAAGCTAAAATTATCGCTCATCCTCAGTACTCTAACCTCCTAGAAGCGTACATGGATTGTCAAAAGGTCGGAGCTCCACCAGAAGTGGTGATGCGTCTGGCTGCTGCTCGACAAGAATTTGAGGCACGGCAACGGTCTTCAATAACTTCGAGAGGAACTACAAAGGACCCAGAACTTGACCAATTCATGGAAGCTTATTACGACATGCTAGTGAAGTATCGGGAGGAACTCACAAGGCCTATTCAAGAAGCTATGGACTTCATGCGGAGAATTGAATCTCAGCTTAATATGCTCACCAATGGAACCGTCCGGATCTTCACTGAAGATAAATGCGAAGGTGCGGGCTCGTCCGAAGAGGATCAAGAAAACAGTGGCGGGGAAACAGAACTGCCAGAGATTGATCCTAGAGCTGAAGATCGTGAACTGAAAAGCCACTTGCTGAGAAAGTACAGCGGTTACTTGAGTAGCCTCAAGCAAGAACTTTCCAAGAAGAAGAAGAAAGGGAAATTACCAAAGGATGCTAGGCAAAAGCTGCTTAATTGGTGGGAATTGCACTACAAATGGCCTTATCCATCTGAATCTGAGAAAGTGGCTTTGGCTGAATCAACTGGTCTGGATCAGAAACAAATAAACAACTGGTTTATAAATCAAAGGAAGCGACACTGGAAACCTTCTGAAGATATGCAATTTATGGTGATGGATGGGTTACATCCCCATAACAACGCAGCTCTCTACATGGATAGCCATTACATGGCTGATAGCCATTTCCGGTTGGGGCCATAA 1131 0.4518 MEEYNHHLNVASASRGNFLYSSSAAAVAYGRSSSGGSSNVGNHHQHQHAQIPMDTFHLQTGSRSEQCFQSDQALSTVKIEANTSQPAQIFPYALMRANQHHHQGVLNESTGDVEAMKAKIIAHPQYSNLLEAYMDCQKVGAPPEVVMRLAAARQEFEARQRSSITSRGTTKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIESQLNMLTNGTVRIFTEDKCEGAGSSEEDQENSGGETELPEIDPRAEDRELKSHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPHNNAALYMDSHYMADSHFRLGP* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02473 376 Pfam KNOX2 domain 170 215 IPR005541 GO:0003677|GO:0005634
Pte1g02473 376 ProSiteProfiles 'Homeobox' domain profile. 277 340 IPR001356 GO:0003677
Pte1g02473 376 SMART KNOX1_2 114 158 IPR005540 GO:0003677|GO:0005634
Pte1g02473 376 MobiDBLite consensus disorder prediction 228 253 - -
Pte1g02473 376 Gene3D - 282 344 - -
Pte1g02473 376 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 53 347 - -
Pte1g02473 376 ProSiteProfiles ELK domain profile. 257 277 IPR005539 GO:0003677
Pte1g02473 376 CDD homeodomain 289 341 IPR001356 GO:0003677
Pte1g02473 376 Pfam ELK domain 257 278 IPR005539 GO:0003677
Pte1g02473 376 Pfam Homeobox KN domain 297 336 IPR008422 GO:0003677|GO:0006355
Pte1g02473 376 SMART ELK_2 257 278 IPR005539 GO:0003677
Pte1g02473 376 SMART HOX_1 279 344 IPR001356 GO:0003677
Pte1g02473 376 SUPERFAMILY Homeodomain-like 278 353 IPR009057 -
Pte1g02473 376 FunFam Homeobox protein knotted-1-like 2 282 344 - -
Pte1g02473 376 Pfam KNOX1 domain 115 157 IPR005540 GO:0003677|GO:0005634
Pte1g02473 376 ProSitePatterns 'Homeobox' domain signature. 315 338 IPR017970 GO:0000981|GO:0006355
Pte1g02473 376 SMART KNOX2_2 165 216 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02473 Pte-Chr1 45255268 45258808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02473 64 377 Homeobox Transcription Factor Family AT4G08150 71.341 5.20e-149 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pte1g02473 KNOX2 3.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02473 - - gmx:100807602 534.258