Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02445 ATGTATACAATTGACAATTTTCATGTGCCTCCAGAGCTCATGCTGGATTTAAGTTGTTGTCTTACATGTAAGTACGCTTCATATTATAATTTTCAGGGTAAACCTCATACTGGTTTTTACTTTATTATAACAGAAAAAGAAAATCTTTGCCTGTATGGATTTCCTAGTGAGCAGTGGGAAGTCAACCTACCAGCTGAGGAGGTGCCTCCAGAGCTCCCGGAGCCTGCCTTGGGTATTAACTTTGCCAGAGATGGGATGCAAGAGAAGGATTGGCTGTCCTTGGTTGCAGTTCACAGTGATGCGTGGTTACTTGCTGTTGCCTTTTATTTTGGTTCTAGGTTTGGATTTGACAAGGCTGATAGGAAGAGACTGTTTAACATGATAAATGATCTTCCAACAATATTTGAAATTGTGACCAGAGCAGCCAAGAAACAAACGAAGGAAAAGTCAAATCATAGCAGCAGTAAATCAAAATTGAACTCTAAGCAAGGTTCTGAATCTCAGGGGAAGAATCCCAAGACAGTTCAATCAAAGGACGAAGATGAGGATGCTTTGGATGAAGAGGATGATGATGAGCATGGAGAAACATTATGTGGGGCTTGCAGTGAGCACTATGCAAACGACGAGTTCTGGATCTGCTGCGACATCTGTGAGAAGTGGTTCCATGGAAAGTGTGTGAAGATCACCCCTGCTAGGGCGGAGCATATCAAGCAGTACAAATGTCCATCGTGCAGCAACAAGAGAGCTCGACCTTAA 756 0.4272 MYTIDNFHVPPELMLDLSCCLTCKYASYYNFQGKPHTGFYFIITEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGSRFGFDKADRKRLFNMINDLPTIFEIVTRAAKKQTKEKSNHSSSKSKLNSKQGSESQGKNPKTVQSKDEDEDALDEEDDDEHGETLCGACSEHYANDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02445 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Pte1g02445 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
Pte1g02445 251 Pfam PHD-finger 198 247 IPR019787 -
Pte1g02445 251 CDD PHD_AL_plant 197 247 IPR044104 -
Pte1g02445 251 Pfam Alfin 45 139 IPR021998 GO:0006355|GO:0042393
Pte1g02445 251 PANTHER CPG BINDING PROTEIN 44 250 IPR045104 GO:0006355|GO:0042393
Pte1g02445 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Pte1g02445 251 MobiDBLite consensus disorder prediction 156 172 - -
Pte1g02445 251 MobiDBLite consensus disorder prediction 145 191 - -
Pte1g02445 251 SUPERFAMILY FYVE/PHD zinc finger 187 248 IPR011011 -
Pte1g02445 251 FunFam PHD finger alfin-like protein 190 246 - -
Pte1g02445 251 SMART PHD_3 197 245 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02445 Pte-Chr1 45025455 45028455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02445 45 252 Alfin-like Transcription Factor Family AT3G42790 73.684 1.80e-92 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Pte1g02445 Alfin 1.6e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02445 K26274 - mnt:21387296 372.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g02445 1 45025455 45028455 Pte1g02445 1 45025455 45028455 RCT
Pte3g01244 3 10625952 10628047 Pte1g02445 1 45025455 45028455 RCT
Pte1g02445 1 45025455 45028455 Pte3g01244 3 10625952 10628047 RCT