Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02433 ATGTATCAACCGAAGCAGCAGCGAATGCATAATCCACTGAAACGGAGTTTCGACGACATGGGCGCTGTGGACGCTGATGTTTCTCTTGAACATGCTCCTAAAAAACCAGCACACTCCACCAGTACCCACGACTTCACCCCCAGGAGTTATCAATTGAAGGTGTTTGAAGTTGCAATGAAAAGGAACACAATAGCTGTCTTGGAGACTGGTGCAGGAAAGACTATGATAGCTGTAATGCTGATGAAAGCTGTTGCTCAAGCTGCGAAGTCCGGTTATCATAGAAAAAAGATTATTTTCCTGGCTCCAACTGTTCATCTTGTAAACCAGGCATGCCTTTCTACGATCTTCCTGGTGGTAAGCAGTTATACAAAATTTGAAGTGGGTGAGTATTTTGGGGCAAAGGGGGTTGAGGCATGGAGTTCAAAGAACTGGGAGAAGGAAATCAATTTGCATGACGTACTAGTTATGACACCACAGATTTTTTTGGATGCACTGCGAAAGGCATTTCTAAAATTAGAAACTGTATGCTTGATGATTATTGATGAATGTCATCGAGCAACTGGTAACCATCCCTATGCAAAAGTAATGAAGGAATTTTATCATAGATCTATAGAAAAACCAAAGGTTTTTGGGATGACAGCGTCACCAGTACTTAAGAAAGGTGTTTCCTCTACAGAAGATTGTGAGGGGCAAATGTCAGAACTTGAAAGCACACTGGACTCTCAGATCTACAGCATTGCAAATAACGGGGAGATGGATTTGCATATACCCTCAGCACAGGAAATCTGTCGATTTTATGATGTAGCTAGTTTTCCTGCAATGAATTTGAAACAAAAAATTGAAGCTTTAGGGTCCAAGTTAGATTCATTACTACTAGAATTGCATCAAAGTAAATACAAGGACATAAATGACAAATTGAAGGCCCTCCGTAGGCGGATGTCCAAAGACCAAACAAAAATTTTGTATTGCCTTGATGATCTTGGTCTCTTCTGCACCTATGAGGCTGTTAAAATCTGTCTACAAAAAGCCCCTCAATTTGAAGAAGGTTGTGATGTTTACAAGAAAAGCTATTCACAGTACAAAACCTTTCTTGAAGAATTAATGCATATGGTTGAGGACTCTATCTCGTTTGCTGATAGGGATCTTTTGGATGCTGGGTTTGACCTTTCTGAGGCAGCACAGTCAGGCTACATGTCGCCAAAAGTAATTGAACTTCTTCAACTTCTATTATCATTGGGAGGAACCAGTAATATGTTGTGCTTGGTTTTTGTTGAAAGAAAACTAACAGCTAAAGTTATTGAAAGATTAGTTAAGAAAGTTTTTCAACTATCACACTTCACAGTTTCTTATCTAACTGGTAATGGTGCATCCTTCGATGCACTACCACCTAAGAGGCAGAAGGAGAACTTAGAGTCATTTCGATCTGGAAAGGTCAATATATTGTTTACAACTGACATTGTTGAGGAAGGAATCCATGTGCCAGACTGCTCCTGTGTAATACGATTTGACCTACCTAAGACAGTTAGAAGTTACATCCAATCTCGAGGACGAGCTCGGCAGACAAACTCCCAGTTCATTGTTATGCTGGAGAGGGGAAACTCGAAACAAAGGGATTTTCTGTTTAACCTCATGAGGAGTGAGTACTCTATGGCAGCTGCTGCATTAAACAGGGATCATGATGCTGGCATCTCAAAGCCATGTCCCGTTGAAGAAACAAAGACATATGCTGTAGATTCTACCGGAGCATCAATCACTACAGACTCTAGTGTGAGTCTCATAAGCAGATACTGTGACAAGCTTCCTCGTGAAAAGCACTCTTCGTTGAAGCCCATCTTTCAGTTCTTATATAATGGAACGACATATGAGTGCAAATTGACATTACCTCCTAATGCTGCTTTCTGCACTATAGTTGGTCCCTCGAGCAGAAATTCTCAACTTGCAAAGCAGCTTGTGTGCTTTGAAGCGTGTAAAAAGCTACATGAATTGGGTGCTTTAGATGATCGTCTCCTCCCATTAACTGAAGAGCCTCTGGAAAATAAATCTAGCGTGAAAAGCAAAGAATCGAAATCAGAAGCAGGAACTACAAAACGGAAGGAATTACATGGTTCTGTCTGCATCCGCGCCTTGTGTGGGACCTGGGGAGATAAATTTGATGGTTCTAATTTTCATGCATATCAATTTGATTTCTCTAGTACCATTGACAAAGATCAGTTTTCTAGTTTTGTTCTACTGATTGAATTGGAGCTTGATGATGATGTGGGAAACTTTGAGTTGGAGCTATTCAGTATTTCTAAGGTTGTGAAAGTTAAAGTCTCTTCATGTGGGCCAGTTCATCTTGATGCTGAAGAGATGACGAAAGCTAAATGCTTCCAAGAACTTATTTTCAATGGTTTGTTTGGGAAATTGTTCACTGGATCCAAATCAACTGGAACCCCTGGAGAGTTTTTACTTCAGAAAGAAATGGAGTCACTCTGGACATCCACGAACATGTATCTACTTCTACCGTTGGAGACAGTAGATCGTTCAAGTCATGGATCTCTGAGTTTAAACTGGAAAGTTATTGATTCTTGTTGTTCTACTGTACAATTTATAAAGAAAAGCTCTTGGTGTGGGAACAATGATCGCATGGATGGGATGAAGTTGTCATCTTGTAGCTCTTCTCCACTAGAGTTTGAGACTGCACACAAAGATAACATTCACTTTGCCAACTGTGTGGTCAATATGAAAAATCTTAAAGATATGGTAGTTTTGGCCATTCACACGGGAAGGCTTTATTCTATTGTTGAGGTTGTTGATAATACCTCTGCTGAAAGTCCTTTTGATGGAAATACAGATAAAGGCTGCCCTCATAGAACGTTTAGCGAGTACTTCAAGCAAAAGTATGGAATCATGCTCAGACATCCAGGCCAGCCCTTGTTGCGGCTGAAGCAAAGTCATAATCCTCACAATCTTCTTGTGAACTTCTTTGATGAAGGATCTCAGGGTAAGGGATCGAAAGGAGGTTCACTCGTTCGAAAGCCACAAATGCATGTTCATATCCCACCAGAGCTTCTTGTTAACGTTGATATCAGGAGAGATGTTTTGAAGACAATGTACGTGCTTCCATCACTGATGCACCGTATGGAATCTCTGATGTTATCCAGCCAACTTAGAGGAGAGATTGGAAGACTAAACAGCAACATCCATATCCCTAGCTCACTGATACTGGAAGCACTTACCACACTCAGATGTTGTGAAAACTTTTCAATGGAACGCTTGGAACTACTAGGAGATTCAGTTTTGAAGTATGCTGTAGGCTGCCACCTTTTTCTCAAACATCCCAAGACACATGAAGGCCAATTGAGTTACCAACGCTCACGAGCTGTGTGTAACTCTACCCTGCATAAGTTGGGAACAGATTCCAAAATACAGGGATATATTCGTGACTCACCATTCGATCCACGACGTTGGATTGCTCCAGGGCAGCGATCTTTACATCCTTCTCCATGTAAATGTGGGGTGGACACATTGGAAGTTCCTTTAGTTGAGAAATTTCAAACTGAAGACACTAAAACTATAGTTGGGAAGTGCTGTGACAAGGGCCACAGATGGATAATATCAAAGACCATAGCTGATTGTGTTGAAGCTCTGGTAGGAGCATATTTTGTTGGTGGTGGTCTAGATTCTGCGCTTCATGTGATGAAGTGGTTGCATATAGAAGCAGAACTAGATCCATCATTGGTAACTGAAGCTATCACTGCAGCCTCTCTTCATTCATACATCCCCCAAGGTAATGAGATTGCAGCTGTGGAGGCAAAGATTGGATATGAATTTTCTGTCAAGGGTCTCTTGCTAGAAGCCCTAACACATTCATCGGACCAAGAATCAGGAGTTGGCTACTCTTATGAGAGGCTTGAATTTCTGGGTGATGCTGTGCTAGACCTGCTCATAACAAGGCATCTCTATCAGAACCACACAGATACCGATCCAGGAGAGTTAACTGACTTGAGATGTGCTTCGGTCAATAACGAAAATTTTGCTCAAGCTGTTGTCAGACGAGGCCTTCAGCAGCATCTTCGCCATAGCTCTGGAACTCTGCTAAGCCAAATGATGGAGTATGTTAAGTCCGTATCTGAATCAAATAAGCCATCCCGATCGTCCCAAGGCATCAAAGTTCCCAAAGCACTTGGTGATATATTGGAAAGTATTGCTGGGGCTATGCTAATCGATACCAGGCTTAATCTTGATCAAGTGTGGAGGATATTCAAACCTTTGTTATCACCCATTGTTACACCAGAGAGCCTCGAACTGCCACCCGTGCGTGAATTGATTGAATTATGCGACTCTCTCGGGTATTTTATAAAAGAAAGATGTTCAAAGAAGGGGGAAACAGTGCATATGCAGCTTAGTGTGCAGCTAAAAGATGCTTTATTGGTTGGACAAGCCAATGATCGGAGCAGGAAAAAGGCAAAAGGAGACGCCTCTTTGAAAATACTAACGCAGCTTGAGAAAAGAGGGATTACACACTTGGGTTGTGTTTCCAAGAGGAAGAGAGATAATCTGGACAACTCTAATGATTCATTTTCTTGGGGAATTAAGCCCTGCATCTCTTCAGAAGGACTTGATGAACAGACCCCAAAGCGGATAAATTGCGAAAAGCAGATGACTGAAATTCCCTTGCCTGCAGACTCTGGCCTTGGACCTCCAACAGAAAGTTGTTTAATGGAAGTTTGTGATCAAACCACTGTGACGCCAGTTATAACATCCATCAATATGAAGAAAGGAGGACCTCGCACCTCTCTTTTTGAACTCTGCAAAAAAATGCAATGGCCAATGCCTACTTTTAAAACATCAGAACATAAATCAAGGACACCAATCGAATTCAAAGAAAGCTGTGAAACTAGAAAGGGGTTCAACAGTTTCGTTTCAAACATAACTTTGTGCATACCCAGTTTTGGGAATATAGAATGCAAAGGTGATGCTAGAGCTGATAAGAAGAGTTCATTTGACTCAGCTGCACTCGTCATGCTCCACGAACTTGAGCGAATGGGAAGAATAGAGGTTTCTAGCTCCTAG 5055 0.4158 MYQPKQQRMHNPLKRSFDDMGAVDADVSLEHAPKKPAHSTSTHDFTPRSYQLKVFEVAMKRNTIAVLETGAGKTMIAVMLMKAVAQAAKSGYHRKKIIFLAPTVHLVNQACLSTIFLVVSSYTKFEVGEYFGAKGVEAWSSKNWEKEINLHDVLVMTPQIFLDALRKAFLKLETVCLMIIDECHRATGNHPYAKVMKEFYHRSIEKPKVFGMTASPVLKKGVSSTEDCEGQMSELESTLDSQIYSIANNGEMDLHIPSAQEICRFYDVASFPAMNLKQKIEALGSKLDSLLLELHQSKYKDINDKLKALRRRMSKDQTKILYCLDDLGLFCTYEAVKICLQKAPQFEEGCDVYKKSYSQYKTFLEELMHMVEDSISFADRDLLDAGFDLSEAAQSGYMSPKVIELLQLLLSLGGTSNMLCLVFVERKLTAKVIERLVKKVFQLSHFTVSYLTGNGASFDALPPKRQKENLESFRSGKVNILFTTDIVEEGIHVPDCSCVIRFDLPKTVRSYIQSRGRARQTNSQFIVMLERGNSKQRDFLFNLMRSEYSMAAAALNRDHDAGISKPCPVEETKTYAVDSTGASITTDSSVSLISRYCDKLPREKHSSLKPIFQFLYNGTTYECKLTLPPNAAFCTIVGPSSRNSQLAKQLVCFEACKKLHELGALDDRLLPLTEEPLENKSSVKSKESKSEAGTTKRKELHGSVCIRALCGTWGDKFDGSNFHAYQFDFSSTIDKDQFSSFVLLIELELDDDVGNFELELFSISKVVKVKVSSCGPVHLDAEEMTKAKCFQELIFNGLFGKLFTGSKSTGTPGEFLLQKEMESLWTSTNMYLLLPLETVDRSSHGSLSLNWKVIDSCCSTVQFIKKSSWCGNNDRMDGMKLSSCSSSPLEFETAHKDNIHFANCVVNMKNLKDMVVLAIHTGRLYSIVEVVDNTSAESPFDGNTDKGCPHRTFSEYFKQKYGIMLRHPGQPLLRLKQSHNPHNLLVNFFDEGSQGKGSKGGSLVRKPQMHVHIPPELLVNVDIRRDVLKTMYVLPSLMHRMESLMLSSQLRGEIGRLNSNIHIPSSLILEALTTLRCCENFSMERLELLGDSVLKYAVGCHLFLKHPKTHEGQLSYQRSRAVCNSTLHKLGTDSKIQGYIRDSPFDPRRWIAPGQRSLHPSPCKCGVDTLEVPLVEKFQTEDTKTIVGKCCDKGHRWIISKTIADCVEALVGAYFVGGGLDSALHVMKWLHIEAELDPSLVTEAITAASLHSYIPQGNEIAAVEAKIGYEFSVKGLLLEALTHSSDQESGVGYSYERLEFLGDAVLDLLITRHLYQNHTDTDPGELTDLRCASVNNENFAQAVVRRGLQQHLRHSSGTLLSQMMEYVKSVSESNKPSRSSQGIKVPKALGDILESIAGAMLIDTRLNLDQVWRIFKPLLSPIVTPESLELPPVRELIELCDSLGYFIKERCSKKGETVHMQLSVQLKDALLVGQANDRSRKKAKGDASLKILTQLEKRGITHLGCVSKRKRDNLDNSNDSFSWGIKPCISSEGLDEQTPKRINCEKQMTEIPLPADSGLGPPTESCLMEVCDQTTVTPVITSINMKKGGPRTSLFELCKKMQWPMPTFKTSEHKSRTPIEFKESCETRKGFNSFVSNITLCIPSFGNIECKGDARADKKSSFDSAALVMLHELERMGRIEVSSS* 1685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02433 1684 FunFam Endoribonuclease dicer-like 1 392 555 - -
Pte1g02433 1684 FunFam Dicer-like 104 899 1019 - -
Pte1g02433 1684 Pfam Helicase conserved C-terminal domain 416 518 IPR001650 -
Pte1g02433 1684 SMART PAZ_2_a_3 886 1046 IPR003100 GO:0005515
Pte1g02433 1684 SUPERFAMILY RNase III domain-like 1055 1237 IPR036389 GO:0004525|GO:0006396
Pte1g02433 1684 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 533 IPR027417 -
Pte1g02433 1684 Gene3D - 391 555 IPR027417 -
Pte1g02433 1684 Pfam Type III restriction enzyme, res subunit 58 216 IPR006935 GO:0003677|GO:0005524|GO:0016787
Pte1g02433 1684 SMART helicmild6 435 521 IPR001650 -
Pte1g02433 1684 Coils Coil 273 319 - -
Pte1g02433 1684 Gene3D Dicer dimerisation domain 584 682 IPR038248 -
Pte1g02433 1684 Gene3D paz domain 895 1019 - -
Pte1g02433 1684 SUPERFAMILY PAZ domain 905 1018 IPR036085 GO:0005515
Pte1g02433 1684 FunFam Endoribonuclease dicer-like 1 584 680 - -
Pte1g02433 1684 CDD RIBOc 1276 1428 IPR000999 GO:0004525|GO:0006396
Pte1g02433 1684 Gene3D - 1596 1675 - -
Pte1g02433 1684 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 54 216 IPR014001 -
Pte1g02433 1684 SUPERFAMILY RNase III domain-like 1259 1425 IPR036389 GO:0004525|GO:0006396
Pte1g02433 1684 ProSiteProfiles Ribonuclease III family domain profile. 1047 1219 IPR000999 GO:0004525|GO:0006396
Pte1g02433 1684 Pfam Dicer dimerisation domain 589 675 - -
Pte1g02433 1684 FunFam Endoribonuclease dicer-like protein 42 286 - -
Pte1g02433 1684 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 589 679 IPR005034 GO:0016891
Pte1g02433 1684 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 404 559 IPR001650 -
Pte1g02433 1684 CDD DEXHc_dicer 45 246 - -
Pte1g02433 1684 ProSiteProfiles PAZ domain profile. 909 1022 IPR003100 GO:0005515
Pte1g02433 1684 FunFam Endoribonuclease dicer-like 1 1254 1426 - -
Pte1g02433 1684 Gene3D - 41 289 IPR027417 -
Pte1g02433 1684 Pfam PAZ domain 900 1043 IPR003100 GO:0005515
Pte1g02433 1684 SMART ultradead3 43 244 IPR014001 -
Pte1g02433 1684 FunFam Dicer-like 104 1042 1231 - -
Pte1g02433 1684 Pfam Ribonuclease III domain 1084 1217 IPR000999 GO:0004525|GO:0006396
Pte1g02433 1684 Pfam Ribonuclease III domain 1296 1404 IPR000999 GO:0004525|GO:0006396
Pte1g02433 1684 Gene3D Ribonuclease III domain 1255 1426 IPR036389 GO:0004525|GO:0006396
Pte1g02433 1684 Gene3D Ribonuclease III domain 1053 1236 IPR036389 GO:0004525|GO:0006396
Pte1g02433 1684 PANTHER DICER-RELATED 61 1499 - -
Pte1g02433 1684 CDD RIBOc 1066 1238 IPR000999 GO:0004525|GO:0006396
Pte1g02433 1684 SMART riboneu5 1275 1428 IPR000999 GO:0004525|GO:0006396
Pte1g02433 1684 SMART riboneu5 1066 1239 IPR000999 GO:0004525|GO:0006396
Pte1g02433 1684 ProSiteProfiles Ribonuclease III family domain profile. 1260 1405 IPR000999 GO:0004525|GO:0006396
Pte1g02433 1684 ProSitePatterns Ribonuclease III family signature. 1296 1304 IPR000999 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02433 Pte-Chr1 44945187 44958013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02433 445 518 Eukaryotic Initiation Factors Gene Family AT3G19760 37.838 8.65e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02433 K11592 - cave:132188155 2098.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g02433 1 44945187 44958013 Pte1g02433 1 44945187 44958013 RCT
Pte3g00632 3 4950503 4963112 Pte1g02433 1 44945187 44958013 RCT
Pte2g01490 2 28531733 28543911 Pte1g02433 1 44945187 44958013 RCT