Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02425 ATGGCTTCCAAGCTCTGTGACTCGTGCAAATCCGCCACCGCCACATTGTTTTGCCGAGCAGACGCTGCCTTTCTCTGTGTCAGTTGCGATTCCAAAATTCACGCAGCCAACAAGCTTGCCTCTCGGCACGCGCGCGTTTGGGTTTGTGAGGTCTGTGAGCAAGCTCCGGCACACGTCACTTGTAAGGCGGACGCAGCTTCACTCTGTGTCACATGCGATCGGGACATCCACTCCGCCAACCCACTAGCCCGCCGTCATGAGCGAGTTCCTGTGATTCCATTCTTCGACCTGGTCAACTCGCTTGGAGTCAAGCCATCCGGAGCCGTCGTCAACTTCCTTGAGGGCCGTTACTTCAACGAGGTCAATCAAGATGCTGAGGTCAGTAGCGAGGAGGCAGAGGCGGCCGCATGGCTGCTTCCAAATCCTAAACCGGTCGAAAGCCCTGAACTGAACTTAGGTCAGTACGTGTTATCGGAAATGGACCGGTATCTGGATCTGGATTACGGGCCTGTGGATCCAAAAGTCGAAGCTCAGGAGCAGAACAGCTCCGGCACCGATTGTGTGGTTCCGGTACAGAGTAAGAGCCCACCACCTCCGTCGTCAGTGAACGAGCACTTCTTGGACATGGATTTCACGGGTTCCCAACCCTTTCCTTATGTCTGTCAAAGTGTATCATCGTCGTCCATGGAAGTAGGGGTAGTGCCAGATGGGAATACCATGTCAGATAAGTCGACATGTTATGGAAAGCCAATGACTACAGCATTGGATTCAGCGAATCAGGCGGTGCAGATCACAGCGGCAGATAGAGAAGCGAGGGTGCTAAGGTATAGGGAGAAGAGGAAGAACCGAAAGTTCGAGAAGACGATTCGGTATGCGTCGCGCAAGGCTTATGCCGAAACGAGGCCGCGAATCAAAGGAAGGTTCGCTAAACGGTCCGATGTAGAAGTGGAAGTGGATAGTTTCGGAGAGTACGGCGTCGTACCTTCTTATTAA 993 0.5327 MASKLCDSCKSATATLFCRADAAFLCVSCDSKIHAANKLASRHARVWVCEVCEQAPAHVTCKADAASLCVTCDRDIHSANPLARRHERVPVIPFFDLVNSLGVKPSGAVVNFLEGRYFNEVNQDAEVSSEEAEAAAWLLPNPKPVESPELNLGQYVLSEMDRYLDLDYGPVDPKVEAQEQNSSGTDCVVPVQSKSPPPPSSVNEHFLDMDFTGSQPFPYVCQSVSSSSMEVGVVPDGNTMSDKSTCYGKPMTTALDSANQAVQITAADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSDVEVEVDSFGEYGVVPSY* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02425 330 CDD Bbox1_BBX-like 5 48 - -
Pte1g02425 330 Pfam CCT motif 269 311 IPR010402 GO:0005515
Pte1g02425 330 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Pte1g02425 330 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Pte1g02425 330 MobiDBLite consensus disorder prediction 177 200 - -
Pte1g02425 330 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Pte1g02425 330 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Pte1g02425 330 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 6 319 IPR045281 GO:0009909
Pte1g02425 330 ProSiteProfiles CCT domain profile. 269 311 IPR010402 GO:0005515
Pte1g02425 330 SMART bboxneu5 49 91 IPR000315 GO:0008270
Pte1g02425 330 SMART bboxneu5 1 48 IPR000315 GO:0008270
Pte1g02425 330 CDD Bbox1_BBX-like 48 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02425 Pte-Chr1 44875200 44877316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02425 1 331 C2C2-CO-like Transcription Factor Family AT5G24930 63.288 1.52e-139 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pte1g02425 zf-B_box 4.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02425 - - tcc:18587662 464.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g02425 1 44875200 44877316 Pte1g02425 1 44875200 44877316 RCT