Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02412 ATGGGGAAGCCTGCTGGGAAAAAGAAAGATCAGGTAGCTCAAAAATCGACCAATGCAAACGCCAGTGCGACTGCCAAGCCTAGCAGGCCCTCTGTCCTTGATCGAACTCCCTCTTTGAAGGCCTTTGATGAAGACACGGCTATCTTTATCATTATGTCACAGGAGCTCAAAGAAGATGGTAACAGGTTATACCAAAAGAAGGATCACGAAGGAGCTATGTTGAAATTTGAGAAAGCACTCAAACTACTACCTCGGAACCACATTGATGTCGCTCATCTCCACAACAGTATGGCTGCGTGTTATATGGAGTTGGGTCTTGGTGAGTACCCCCGAGCCATCAATGAGTGCAATTTAGCCTTGGAAGTATCGTCTAGATATAGTAAAGCTCTATTGAGAAGAGCAAAGTGTTATGAGGCATTGAACCGATTGGATTTGGCCCTGAGAGATGTGAAAATTGTTTTGAGTATAGAGCCAAATAATTTTACTGCATTGGAGACTATAGATAGTTTGAAAAGGACAATGGAAGAAAAGGGTATCGTTATTGATGACAAAGAGATCAGTATAATGACGCTTGAGCAGGGTCCTGCTTCCCGTACATGTAAACCGATGAAACAAAAAGTTAAGAAGAAAGGCAAGAAACCTGAAAAGAAGGCACATGATAAAGTGATTGCGGAGGAGAATCTGAATACTGTACAGGATAAAGTGATGGTAAAAATAGTGAATGAGGAAGAAAAGAAGGTTGTGGAAGCTGTAAAGGAAGAAAAGGTGGTCACAAAGACTGTCAAATTGGTATTTGGTGAGGATATAAGGTGGGCACAGATACCAGTGAATTGTACTGTGAGCTTACTGAGGGATATAGTAAGAGACCGATTTACTGGATTGAAAGGTGTGCTTATCAAGTATAGGGATCAAGAGGGTGATCTGGTTACTATCACCACCACAGCTGAACTCAGGTTGGCTGAATCTTCAGCGGACCTCCTGGGTTTCCTCCGTCTGCATATTACTGAAGTGAGTCCAGATCAAGAGCCTGCTTATGATGGTGCAGTCACTGAGAAAGTAAAGGGGAAGAATGATAAAAGGGCAGGCGATGTTTCTGGAAATGGGCATGTGGAGAAAGAGAAGTACGCATCAAAGGACTTGACTTGTATCGAGGACTGGGTGGTCCAATTTGCAAGTCTGTTCAAGAACCATGTTGGATTTGACTCTAATTCATATTTAGATCTTCACGAATTGGGGATGAAACTCTATTCAGAAGCTATGGAGGAAACTGTTACATGTGATGATGCTCAACAACTTTTTGATATTGCTGCCAATAAATTTCAAGAGATGGCAGCGCTGGCTATATTTAATTGGGGGAATACTCACATGTCCAGGGCAAGGAAGAGAGTTTCCTTTCCTGAGGATGGATTAGAGGATCTGGAACACATCAAGGCTGCATATGAATGGGCACAAAAGGAGTACATGATGGCAGAAAAGAGATATGAAGAAGCCTTGGAAATCAAGCCAGACTTCTATGAAGGTTTTCTTGCACTTGGGCATCAAAAGTTTGAGCTTGCAAAACTTTGTTGGTACCATGCACGTATAAGCAAGAAGGATCTACATATAGAAGATGGTGCTGCTGCAGTGGTCCTACAGCTCTACAACAAGGCTGAAGACAGCATGGAGAAAGGCATGCTGATGTGGGAAGAAATAGAGGAGAAGCGTCTCAATGGACTATCTGAGTTTGATAAATATAAGTCTCAGCTGGAGAAAATGGGATTAGATGGTCTGTTTACAGATGTTTCTGCTGATGAAGCTGCAGAGCATACTTCAAACATGAGGTCTCATATATATATTTTATGGGGTAAACTTTTGTATGAGCGCTCTGTCGTTGAATATAAGTTAAGCCTACCAACCTGGGAAGAATGTTTAGACGTTGCAGTGGAGAAGTTTGAACTTGCTGGAGCTTCTCCTACAGATATAGCGGTTATGATGAAGAATCATTGTTCCAATGCTGCTCTTGAAGATTTAGGATTTAATATTGATGAAATTGTACAAGCATGGCATGAAATGTATGATGCTCAGAGGTGGCAGTTTGGCAATCCTTCTTTTAGGCTGGAACCATTGTTTCGTCGGCGTGTCCTAAAGCTACATCATATCTTGGAGAATTTTCCTGTTATTTCTCAAGTTTGA 2172 0.419 MGKPAGKKKDQVAQKSTNANASATAKPSRPSVLDRTPSLKAFDEDTAIFIIMSQELKEDGNRLYQKKDHEGAMLKFEKALKLLPRNHIDVAHLHNSMAACYMELGLGEYPRAINECNLALEVSSRYSKALLRRAKCYEALNRLDLALRDVKIVLSIEPNNFTALETIDSLKRTMEEKGIVIDDKEISIMTLEQGPASRTCKPMKQKVKKKGKKPEKKAHDKVIAEENLNTVQDKVMVKIVNEEEKKVVEAVKEEKVVTKTVKLVFGEDIRWAQIPVNCTVSLLRDIVRDRFTGLKGVLIKYRDQEGDLVTITTTAELRLAESSADLLGFLRLHITEVSPDQEPAYDGAVTEKVKGKNDKRAGDVSGNGHVEKEKYASKDLTCIEDWVVQFASLFKNHVGFDSNSYLDLHELGMKLYSEAMEETVTCDDAQQLFDIAANKFQEMAALAIFNWGNTHMSRARKRVSFPEDGLEDLEHIKAAYEWAQKEYMMAEKRYEEALEIKPDFYEGFLALGHQKFELAKLCWYHARISKKDLHIEDGAAAVVLQLYNKAEDSMEKGMLMWEEIEEKRLNGLSEFDKYKSQLEKMGLDGLFTDVSADEAAEHTSNMRSHIYILWGKLLYERSVVEYKLSLPTWEECLDVAVEKFELAGASPTDIAVMMKNHCSNAALEDLGFNIDEIVQAWHEMYDAQRWQFGNPSFRLEPLFRRRVLKLHHILENFPVISQV* 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02412 723 MobiDBLite consensus disorder prediction 11 31 - -
Pte1g02412 723 SMART PB1_new 258 337 IPR000270 GO:0005515
Pte1g02412 723 SUPERFAMILY TPR-like 414 518 IPR011990 GO:0005515
Pte1g02412 723 Gene3D - 257 339 - -
Pte1g02412 723 SUPERFAMILY CAD & PB1 domains 257 346 - -
Pte1g02412 723 ProSiteProfiles TPR repeat profile. 127 160 IPR019734 GO:0005515
Pte1g02412 723 ProSiteProfiles TPR repeat profile. 53 86 IPR019734 GO:0005515
Pte1g02412 723 CDD PB1 260 335 - -
Pte1g02412 723 SMART tpr_5 127 160 IPR019734 GO:0005515
Pte1g02412 723 SMART tpr_5 471 504 IPR019734 GO:0005515
Pte1g02412 723 SMART tpr_5 91 126 IPR019734 GO:0005515
Pte1g02412 723 SMART tpr_5 53 86 IPR019734 GO:0005515
Pte1g02412 723 Gene3D Tetratricopeptide repeat domain 52 180 IPR011990 GO:0005515
Pte1g02412 723 SUPERFAMILY TPR-like 51 168 IPR011990 GO:0005515
Pte1g02412 723 ProSiteProfiles PB1 domain profile. 258 337 IPR000270 GO:0005515
Pte1g02412 723 MobiDBLite consensus disorder prediction 1 36 - -
Pte1g02412 723 Pfam PB1 domain 259 336 IPR000270 GO:0005515
Pte1g02412 723 PANTHER PROTEIN CLMP1 1 715 IPR044517 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02412 Pte-Chr1 44741165 44743436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02412 41 176 Calmodulin-binding Proteins AT3G25230 33.784 8.07e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02412 K26538 - qsa:O6P43_015720 991.875