Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02406 ATGACAGGAACGATCATAGCTAAGCAGTTTATGATTGTCTATCCCGGCCATCACTGTCCTGATTTAAATCTATCTGTGAAAGTGCAGTCCCATTATGTACTGTTGCTCTGTTCTTTTAAAGAGCAACTACAACAGCATGTCCGGGTCCATGCAATGGAAGCAGTGATGGCTTGCTGGGAGATAGAGCAATCTTTGCAAAGTTTAACAGGAGTTTCGCCTGGCGAAGGAAGTGGTGCAACCATGTCCGATGTTGAGGATGATCAAGTAGATAGTGACGCCAATCTGTTTAATGGCAATTTTGATGGACCAGACAGCATGGGATTTGGTCCTCTTGTTCCCACAGAGAGTGAGAGGTCTCTCATTGAGCGTGTGAGACAGGAATTAAAGCGTGAACTGAAACATGGCTACAAGAAGAAAATTGTTGATATACGAGAGGAAATCTTGCGCAAAAGGAGAGCAGGGAAGCTTCCTGGTGACACCACTTCTGTCTTGAAAGCTTGGTGGCAATCACATGCCAAGTGGCCGTATCCCACGGAGGAAGATAAGGCAAGGTTGGTACAGGAAACGGGTTTGCAGTTGAAACAGATAAATAACTGGTTCATAAATCAGAGGAAGAGAAACTGGCACAGCAATCCTTCAACGTCTACGGTGTTGAAGAACAAACGTAAGAGGTGA 675 0.4504 MTGTIIAKQFMIVYPGHHCPDLNLSVKVQSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGSGATMSDVEDDQVDSDANLFNGNFDGPDSMGFGPLVPTESERSLIERVRQELKRELKHGYKKKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKNKRKR* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02406 224 Pfam KNOX2 domain 31 69 IPR005541 GO:0003677|GO:0005634
Pte1g02406 224 ProSiteProfiles ELK domain profile. 127 147 IPR005539 GO:0003677
Pte1g02406 224 Pfam Homeobox KN domain 167 206 IPR008422 GO:0003677|GO:0006355
Pte1g02406 224 ProSiteProfiles 'Homeobox' domain profile. 147 210 IPR001356 GO:0003677
Pte1g02406 224 SMART HOX_1 149 214 IPR001356 GO:0003677
Pte1g02406 224 FunFam homeobox protein knotted-1-like 3 isoform X1 148 209 - -
Pte1g02406 224 CDD homeodomain 150 211 IPR001356 GO:0003677
Pte1g02406 224 Gene3D - 148 209 - -
Pte1g02406 224 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 62 209 - -
Pte1g02406 224 SMART KNOX2_2 1 70 IPR005541 GO:0003677|GO:0005634
Pte1g02406 224 SUPERFAMILY Homeodomain-like 149 213 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02406 Pte-Chr1 44717102 44718718 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02406 27 225 Homeobox Transcription Factor Family AT5G25220 88.442 3.63e-128 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pte1g02406 Homeobox_KN 8.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02406 - - mof:131150668 376.711