Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02399 ATGGAAAATCTTGGGAAAGAGGGATTCCTTCCTGATAAGCCAAGCATCCTGGCTTGTATTGAGGTTCCTCCATGTCCCAACACACCATTGCATAATCCTGCAGAGAAGAAGCAGAAACATGTTGAAGAGGATGAAGAAGAAAAGGACCAACAGAAGGAAGAAAAGCAAGGTTATTTGTTAGATTTGAACATTTCTTGTGATGTAGAGAGGAGATGTGAACTCAATCTGAATCTGTCAACCACAACTTCGTCAGAAACCCGTCAAGCTTCTGAAGCTGAACCCCGGTTTTTCTCTTGCAACTATTGTCACAGAAAGTTCTACAGCTCACAAGCTCTTGGAGGACATCAAAATGCTCACAAGAGAGAGAGAACTCTAGCAAGAAGAAGTCAAAAGTTAGGAGCACAGATAATGGCCTCTGCAGCTGCTTTTGGGCTCCATCCTTTTCTGCAAAGGGAAGGCTATTCAAGTTTAGCATCTCTGCCACTACATGGTGCCTGCCATAGACCTCTGGGGATTCAAGCTCACTCGATGATTCATAAGCCTTCTTATACTTCCCCTAGTGCTGGATTTGGTATTACTTATAGGCAGAGACCCACGATCGAACAACAACCAGGAATAGGGAAGCTAGCTGCAGCTGGAAATTTGCACGGAACAACGGTTGGATTATCTTCACAAAGTATCATAGGTAGATTTGCCATGGCAAAGACAGTGCTCACTTCTCAAACCGAAGATGAAATGGGTGGTTATGGTGATGTTAGAACTCAGCCGAAGGCCAAACGGGAAGAGATGAAGCCGGTTGACCTGGCACTCCGGCTTTGA 819 0.4493 MENLGKEGFLPDKPSILACIEVPPCPNTPLHNPAEKKQKHVEEDEEEKDQQKEEKQGYLLDLNISCDVERRCELNLNLSTTTSSETRQASEAEPRFFSCNYCHRKFYSSQALGGHQNAHKRERTLARRSQKLGAQIMASAAAFGLHPFLQREGYSSLASLPLHGACHRPLGIQAHSMIHKPSYTSPSAGFGITYRQRPTIEQQPGIGKLAAAGNLHGTTVGLSSQSIIGRFAMAKTVLTSQTEDEMGGYGDVRTQPKAKREEMKPVDLALRL* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02399 272 Gene3D Classic Zinc Finger 73 143 - -
Pte1g02399 272 MobiDBLite consensus disorder prediction 33 54 - -
Pte1g02399 272 Coils Coil 34 61 - -
Pte1g02399 272 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 31 272 IPR044246 GO:0009788
Pte1g02399 272 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Pte1g02399 272 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Pte1g02399 272 MobiDBLite consensus disorder prediction 26 54 - -
Pte1g02399 272 SUPERFAMILY beta-beta-alpha zinc fingers 94 124 IPR036236 -
Pte1g02399 272 FunFam Zinc finger protein 2 75 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02399 Pte-Chr1 44673363 44674780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02399 41 273 C2H2 Transcription Factor Family AT5G10970 40.726 4.47e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte1g02399 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02399 - - qsa:O6P43_019243 228.794
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g02399 1 44673363 44674780 Pte1g02399 1 44673363 44674780 RCT