Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02398 ATGACTATTGAACCTAGAATGGATGAACCGAGAGATCAGTTCCCTGTGGGGATGCGTGTGCTTGCTGTTGACGACGACCTCACTTGCTTAAGGCTGTTGGAGACCTTGCTACGTCGTTGCCGATATCATGTTACTTCAACTAATCAGGCTTTGACGGCACTAAAGTTATTAAGAGAAAACAAAGATAAGTTTGACCTGGTTATCAGTGATGTTCATATGCCAGACATGGATGGATTCAAGCTCCTTGAGCTTGTGGGACTTGAAATGGACCTACCTGTCATTATGTTGTCTGCAAATGGCGATACCAAGCTGGTAATGCAAGGAGTTACTCATGGAGCTTGCGATTATCTGGTAAAACCTGTTCGGATAGAAGAGCTGAAGAACATCTGGCAGCATGTAATGAGGAGAAGAAAAGTTGATCCTAAGGATCAAAGTGGTGATGGAAATCAAGATACCAATCAAGTAAGTAGATTAGGTGGACAAGGCTCTGGAGGGACAGGCGACTCAGATCCGAATGGGAAGGCTATAAAAAGAAGGAAGGATCAAAATGAAGATGAGGATGAGGAGCAGGAGAGTGAGCATGATAATGAGGAAACAACGACACAGAAGAAACCTCGGGTTGTTTGGTCGGTGGAGCTTCACCACAAGTTTGTTGCTGCAGTTCGTCAGTTAGGCATTGACAAAGCTGTACCTAAGAAGATTCTTGACTTGATGAATGTTGAAAAGCTCACCAGGGAGAATGTGGCAAGCCATCTGCAGAAGTACAGGCTTTATTTGAAAAGAATTAGCTGTCAGCAGAACCAACAAGCCAATATGGTGGCAGCTTTAGGCGGTGCAGATCCTTCCTATTTGAGAATGGGGTGTATGAATGGATTGGGGTCTCTGCAGAATATGACTGGATCCAGCCATTTTCAGAATCCAATTTCTGGACCATTCTCACCTGTTGGTATGCTTGGCAGACTGAACACTCCATCTAGTCTGGGTATGCATGGCCTTTCTTCTCCAGGGCTTGTTCAATTGGGTCATTCACAGAATTCAAACTTGATGAATGAGCAAGTTAAGTTTCAGCAAGCACTTCTTCCAGGAAGCATTGATGGCAGTATGTTTCAGGGTACACCTATGTCGATGGAGCTTGGTCAACTACATCAGCGTGGGAGTGTTACTAGTTTTGACGACCTTCAATTGTCTGTTAATAACAAAGTAATTTCCTCAAATCGCTTCCCAGTCTCAAAAGGAGCCATAAATTCAAGCAATCCACATCTTGGTGTTACAAATAATGCGTTAATGTTAGAACCTCAAGAAACAGTAGACGTAAAGACATATGAAAATCCCCCTGCTCTAGTAGGTTCGCTACATTCAGAATTTTCTTCACCTGAGCTAGATCCTGGCAGATGTAATGTAGGTTGGTCAACTGCTGTTCAGTCATCAACATCAAGTGACTGTTTCAGACCAGGCACAATGCATTCGGAAGATAACTTATCTTCAGCACCCTTCCCAATTGGAAACCATCAATTTCAGGATTCAACTAGGGATATGAACTACCAGGGATCATCTGCTCAGCACATGCTGACTAATGCCCCAAAGCAAGAGTGGGATGATCATAGGGGGGACATTTCGTACAATTCAAATGTCTTGTGCAGGTTTACGAACTCTGGCGCTTCTGCAAATGGTGGTGTTTATCACTTGGACCAGAATACAGATCCCCAAAGCACCAGCTTCAACATCACAAACAGATTGAATCTTCATCAATCCTTACACATGAACAATGGTTATGTCAGGAAATCAATTAGTGACTCGACGATGAAATTGAATCTGGGTTATAACATGGACCAGTACAAGGCACAACACGGTTGCACTTCCAATAATTCTGGGTCATTGGAAGACTTGGTGACCGCAATGATGAAACAGGAGCAAGATAAGGTGAATCCAGTGGGAGAGGACTTCGGCTGTGATATTTACTCGATCGGATCATGCATTTGA 1980 0.4354 MTIEPRMDEPRDQFPVGMRVLAVDDDLTCLRLLETLLRRCRYHVTSTNQALTALKLLRENKDKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDTKLVMQGVTHGACDYLVKPVRIEELKNIWQHVMRRRKVDPKDQSGDGNQDTNQVSRLGGQGSGGTGDSDPNGKAIKRRKDQNEDEDEEQESEHDNEETTTQKKPRVVWSVELHHKFVAAVRQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCQQNQQANMVAALGGADPSYLRMGCMNGLGSLQNMTGSSHFQNPISGPFSPVGMLGRLNTPSSLGMHGLSSPGLVQLGHSQNSNLMNEQVKFQQALLPGSIDGSMFQGTPMSMELGQLHQRGSVTSFDDLQLSVNNKVISSNRFPVSKGAINSSNPHLGVTNNALMLEPQETVDVKTYENPPALVGSLHSEFSSPELDPGRCNVGWSTAVQSSTSSDCFRPGTMHSEDNLSSAPFPIGNHQFQDSTRDMNYQGSSAQHMLTNAPKQEWDDHRGDISYNSNVLCRFTNSGASANGGVYHLDQNTDPQSTSFNITNRLNLHQSLHMNNGYVRKSISDSTMKLNLGYNMDQYKAQHGCTSNNSGSLEDLVTAMMKQEQDKVNPVGEDFGCDIYSIGSCI* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02398 659 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Pte1g02398 659 Pfam Myb-like DNA-binding domain 206 256 IPR001005 -
Pte1g02398 659 Gene3D - 200 263 - -
Pte1g02398 659 NCBIfam myb-like DNA-binding domain, SHAQKYF class 204 257 IPR006447 GO:0003677
Pte1g02398 659 Gene3D - 17 153 - -
Pte1g02398 659 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 201 260 IPR017930 -
Pte1g02398 659 MobiDBLite consensus disorder prediction 146 168 - -
Pte1g02398 659 PIRSF RR_ARR_type-B 1 659 IPR017053 GO:0003677|GO:0003700|GO:0009736
Pte1g02398 659 SUPERFAMILY CheY-like 17 140 IPR011006 -
Pte1g02398 659 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 276 IPR045279 GO:0009736
Pte1g02398 659 CDD REC_typeB_ARR-like 20 133 - -
Pte1g02398 659 SMART REC_2 18 130 IPR001789 GO:0000160
Pte1g02398 659 MobiDBLite consensus disorder prediction 137 203 - -
Pte1g02398 659 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Pte1g02398 659 SUPERFAMILY Homeodomain-like 201 261 IPR009057 -
Pte1g02398 659 FunFam Two-component response regulator 200 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02398 Pte-Chr1 44661618 44666261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02398 1 660 Response Regulator Gene Family AT2G25180 43.088 1.25e-131 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pte1g02398 Response_reg 1.6e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02398 K14491 - qsa:O6P43_015747 674.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g02398 1 44661618 44666261 Pte1g02398 1 44661618 44666261 RCT