Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02397 ATGAGTAGCCTGGTTGAGAGGCTACGGGTAAGATCGGTGCGGAAGCCAATATACGATATTGATGAATTGGATGATGATGCTGACCTTTTACCTGGGAAACAGACAGTGAGACAGGAAAAGCTTGAGAGGATAGATAGAACTGATGCGAAAGAGAATTTGTGTCAAGCATGTGGAGAAGATGGGGATCTTCTGAGCTGCGAAACATGCACATACTCATACCACACCAAGTGCTTACTTCTACCTGCCAAATCTCCTCAAATTAGGAACTGGAGGTGCCCTGAATGTGTTAGCCCTCTTAATGATGTTGAAAAACTTCTGGACTGTGAAATGCGGCCAACTGTAGCTGATGGTGATACGCCAAAGCTGGGCTCCAAGCAAATTTTTGTTAAACAATATCTTGTGAAGTGGAAGGGACTGTCATACCTACATTGCTCATGGGTGCCTGAGAAAGAGTTTCTTAAAGCTTTTAAGACAAATCCTCGTCTGAAGATGAAAGTGAATAATTTCCAACGTCAAATGTCTTCTGTCAATAACTCTGAGGAAGACTTTGTTGCCATTCGACCTGAATGGACTACAGTTGATAGGATACTTGCCTGCAGAGTGCAAAATGGTGATAAGGAATACCTTGTGAAGTGGAAAGAACTTTCATATGATGACTGTCACTGGGAACATGAGTCTGATATATCTGCTTTCCAGCCTGAAATTGAGAAGTTCAACAGAATTCAGTCTAGGTCAAAGAAATTTTCCTCTGGCAAGAAGAAAGGGAGTATAGGAAATGACATTGAATCCAAGAAGCCACAGAAAGAGTTTCAACAATATGAACATAGCCCTGAATTTCTTTCCGGTTCATTGCACCCATACCAACTTGAGGGTTTGAACTTTCTGCGGTTTTCTTGGTCAAAACAAACTCATGTCATTCTCGCTGATGAAATGGGACTTGGAAAAACCATACAGAGCATTGCCTTCTTAGCATCTCTTTATGAGGAAGGGATTTCACCGCATCTGGTTGTTGCTCCATTGTCAACACTACGCAATTGGGAACGTGAATTTGCAACATGGGCACCTCAAATGAACGTTGTCATGTATGTTGGATCTTCCCAAGCACGTGCTTTTATAAGAGAGCATGAGTTCTACTTCCCCAAGAATCAGAAGAAAATGAAGAGAAAAAAATCTGGTCAAATAGTTAGCGAAAAAAAGAAAGACAGGATAAAATTTGATGTCCTTCTGACGTCTTATGAGATGATAAACTTAGACACAGCATCCCTGAAGCCGATACAGTGGGAATGCATGATAGTTGATGAGGGTCATCGCCTAAAGAATAAGGATTCAAAGCTCTTTTCATCTTTGAAGCAGTATGTTACTAGACATCGTGTACTTTTGACGGGAACCCCTCTTCAGAACAACCTGGACGAACTTTTTATGCTTATGCACTTCCTTGATGCTGGCAAGTTTGGCAGTTTAGAGGAGTTCCAGGAAGAGTTCAAGGACATCAATCAGGAAGAGCAGATATCAAGGCTTCACAAGATGTTGGCTCCCCACCTCTTGAGAAGGGTAAAGAAAGATGTGATGAAGGATCTGCCTCCTAAAAAGGAACTCATCTTGCGAGTTGAGTTAAGCAGCAAGCAGAAAGAATTATACAAGGCAATTTTGACACGCAATTATCAGATATTGACACGTCGTGGTGGTGCACAGATTTCACTTATCAATGTCGTCATGGAATTAAGGAAGCTTTGTTGCCATCCATACATGTTAGAGGGTGTTGAACCAGATATTGATGATGCAAAAGAGTCCTTCAGACAGCAATTGGAATCGTCTGGAAAAATGCAGTTGTTAGACAAAATGATGGTGAAACTTAAAGAGCAAGGGCATAGAGTCCTTATTTACACACAGTTTCAGCGCATGCTTGACTTGCTGGAAGATTACTGTGCTTACAAGAATTGGTATTATGAAAGAATAGATGGGAAGGTTGGTGGAGCTGAAAGACAGATAAGAATAGATAGGTTCAATGCCAAAAATTCTTCAAGATTTTGTTTTCTTCTTTCGACCAGAGCTGGGGGTTTGGGGATAAACCTTGCAACAGCCGACACTGTTATTATCTATGACAGTGATTGGAACCCTCATGCTGATTTGCAAGCAATGGCGAGAGCTCATCGACTTGGGCAAACTAACAAGGTGATGATTTATCGGCTCATAACGCGAGGGACCATTGAGGAAAGGATGATGCAAATGACCAAGAAGAAAATGGTGTTAGAGCATCTAGTTGTGGGCAAGCTAAAGACTCAAAACATTAACCAGGAAGAGTTAGATGATATCATAAGGTATGGCTCCAAAGAGCTATTTGCGGATGAGAATGACGAGACAGGAAAATCTCGCCAAATTCATTATGATGATGTGGCAATAGACAGATTGCTGGATCGCGAAAAAGTGGGAGACGAGGAGTCCACAGTGGATGATGAAGATGAAAATGGATTTCTGAAGGCATTCAAGGTTGCAAATTTTGAATATATTGAAGAAACGGAGATTGCAGTAGAGGAGGACACGACTACTGATGAAAAAACTACCATAAATAACTCAGAACGAACAAATTACTGGGAGGACTTGCTGAAAGACAAGTATGAAGAACATAAAGTTGAAGAGTTCAATTCTTTGGGCAAAGGAAAAAGAAGTCGCAAGCAGATGGTATCTGTTGACGATGATGACCTTGCTGGTCTGGAAGATGCAAGTTCTGATGGTGAGGATGACAATTATGAAGCAGAAACTGATGGTGAGACAAACTCTGGTGGACCTGCGTCTGTTAAAAGGCCGTACAAAAAGAGAGCTCGTGCTGATAATACAGAACCCCTTCCCTTGATGGAAGGTGAGGGAAAATCATTTAGAGTACTTGGTTTCAATCAAAACCAGAGAGCTACCTTCGTGCAAATATTAATGAGGTTTGGGGTTGGTGATTTTGACTGGAAGGAGTTTGTCTCACGCATGAAACAGAAGACTTATGAAGAAATCAGAGATTATGGAACTTTGTTCTTGTCTCATATTGCAGAGGAAATAACTGAATCACCTTCATTTTCAGATGGTGTCCCAAAGGAAGGACTCAGAATTCAAGATGTGCTTGTTAGAATCGCAGAGCTGCTCCTTATTAGAGACAAAGTATGTTTAAACCCTGGAAAAAGTGTGAAGTTCGTACTAGAGAATCCTGGGACTCCACTTTTTGCAAATGACATTTTATCAAGATACCCAGGTTTAAAAGGTGGAAGAATCTGGAAGGAGGAGCTCGATTTGACATTATTGCGTGCTTTAATAAAGCATGGTTATGGAAGGTGGCAGGCTATTGTTGATGACAAGGATCTGAAGATTCAGGAAGTTATCTGTCAAGAGTTAAACCTCCCTTTTATTACCCTACCAATACCAGGACAACCTGGTTCTCAAGCTCAGAATACCGGAGGTTCCTGTACTGCAGAAGCTCCAAACAATCAATCTGGCGAAAATGGGGGGAACAGCGGATCTTCGGATGTTGGGAAGGGGACTCCTGATGCTACTAATCATGCACAGTTATATCAAGACTCCTCTGTGCTGTATCATTTTAGAGATATGCAGCGAAGACAGGTTGAGTTTGTTAAGAAAAGGGTGCTTCTTCTGGAAAAGGGGCTTAATGCAGAGTACCAAAAAGAATATTTTGCTGATATGAAGGAAAATGAAGTTACAAATGATGAGGCTGAGAATGAACCTAAGGTTTCAAATGAAGGGCATCATAAAGCAGGGGAGACTCACTCTCAAAATATTGATATGCCTCCACTGCAAAGAATAGCTTCGGGAGATTTTTCGGCAGCAGCCTTTGATCAAAATCCAGAACGTCTGGAACTGGGTCGGCTTTATAATGAGATATGCGATGCCCATGAATCTCTTAGAAACGCTAGGGCTGATGAATCAGATGGGGTTGACTTGAGCAAGAAATTACACCAACTGGAAATGGCTTGTGAAGACATTGATAAAATTCTTGGACCTGCGGAGCAGAATTCAGCCAAGTCAAATCATGAACAAAAAGCTGACGTCCAATCACAAAGTGCGACGACGAAGCAGTCAGCAATGGAATATAAACTGTATGAAGCTGAAAGTTCAGACCCTGTAAAAGGTGAAAGTGAAACTGCTTTCAAGACAGAACCTTCCTCTAATTCATGTCAGGCAAATACAAATGCTAAGGATGGTGTTGAGATGAATGAATCAGATGTAAACACACAGGAAACGGAAATGGAAGCAGGAGTTATCATTCTGGATGACTAG 4275 0.4147 MSSLVERLRVRSVRKPIYDIDELDDDADLLPGKQTVRQEKLERIDRTDAKENLCQACGEDGDLLSCETCTYSYHTKCLLLPAKSPQIRNWRCPECVSPLNDVEKLLDCEMRPTVADGDTPKLGSKQIFVKQYLVKWKGLSYLHCSWVPEKEFLKAFKTNPRLKMKVNNFQRQMSSVNNSEEDFVAIRPEWTTVDRILACRVQNGDKEYLVKWKELSYDDCHWEHESDISAFQPEIEKFNRIQSRSKKFSSGKKKGSIGNDIESKKPQKEFQQYEHSPEFLSGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLYEEGISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSSQARAFIREHEFYFPKNQKKMKRKKSGQIVSEKKKDRIKFDVLLTSYEMINLDTASLKPIQWECMIVDEGHRLKNKDSKLFSSLKQYVTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKDLPPKKELILRVELSSKQKELYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIDDAKESFRQQLESSGKMQLLDKMMVKLKEQGHRVLIYTQFQRMLDLLEDYCAYKNWYYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLITRGTIEERMMQMTKKKMVLEHLVVGKLKTQNINQEELDDIIRYGSKELFADENDETGKSRQIHYDDVAIDRLLDREKVGDEESTVDDEDENGFLKAFKVANFEYIEETEIAVEEDTTTDEKTTINNSERTNYWEDLLKDKYEEHKVEEFNSLGKGKRSRKQMVSVDDDDLAGLEDASSDGEDDNYEAETDGETNSGGPASVKRPYKKRARADNTEPLPLMEGEGKSFRVLGFNQNQRATFVQILMRFGVGDFDWKEFVSRMKQKTYEEIRDYGTLFLSHIAEEITESPSFSDGVPKEGLRIQDVLVRIAELLLIRDKVCLNPGKSVKFVLENPGTPLFANDILSRYPGLKGGRIWKEELDLTLLRALIKHGYGRWQAIVDDKDLKIQEVICQELNLPFITLPIPGQPGSQAQNTGGSCTAEAPNNQSGENGGNSGSSDVGKGTPDATNHAQLYQDSSVLYHFRDMQRRQVEFVKKRVLLLEKGLNAEYQKEYFADMKENEVTNDEAENEPKVSNEGHHKAGETHSQNIDMPPLQRIASGDFSAAAFDQNPERLELGRLYNEICDAHESLRNARADESDGVDLSKKLHQLEMACEDIDKILGPAEQNSAKSNHEQKADVQSQSATTKQSAMEYKLYEAESSDPVKGESETAFKTEPSSNSCQANTNAKDGVEMNESDVNTQETEMEAGVIILDD* 1425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02397 1424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 519 778 IPR027417 -
Pte1g02397 1424 Pfam SNF2-related domain 304 584 IPR000330 GO:0005524|GO:0140658
Pte1g02397 1424 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 296 482 IPR014001 -
Pte1g02397 1424 ProSiteProfiles Chromo and chromo shadow domain profile. 100 181 IPR000953 -
Pte1g02397 1424 SMART ultradead3 280 493 IPR014001 -
Pte1g02397 1424 MobiDBLite consensus disorder prediction 1232 1258 - -
Pte1g02397 1424 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 49 1386 - -
Pte1g02397 1424 MobiDBLite consensus disorder prediction 1381 1413 - -
Pte1g02397 1424 Pfam Helicase conserved C-terminal domain 607 720 IPR001650 -
Pte1g02397 1424 SMART chromo_7 189 243 IPR000953 -
Pte1g02397 1424 SMART chromo_7 99 174 IPR000953 -
Pte1g02397 1424 ProSiteProfiles Chromo and chromo shadow domain profile. 191 250 IPR000953 -
Pte1g02397 1424 MobiDBLite consensus disorder prediction 243 268 - -
Pte1g02397 1424 CDD CD1_tandem 98 171 - -
Pte1g02397 1424 MobiDBLite consensus disorder prediction 879 951 - -
Pte1g02397 1424 SMART DUF1087_2 837 903 IPR009463 -
Pte1g02397 1424 MobiDBLite consensus disorder prediction 879 898 - -
Pte1g02397 1424 ProSitePatterns Zinc finger PHD-type signature. 54 95 IPR019786 -
Pte1g02397 1424 MobiDBLite consensus disorder prediction 899 920 - -
Pte1g02397 1424 MobiDBLite consensus disorder prediction 1232 1255 - -
Pte1g02397 1424 Pfam PHD-finger 54 96 IPR019787 -
Pte1g02397 1424 CDD SF2_C_SNF 605 731 - -
Pte1g02397 1424 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 610 771 IPR001650 -
Pte1g02397 1424 MobiDBLite consensus disorder prediction 1137 1179 - -
Pte1g02397 1424 Pfam Chromo (CHRromatin Organisation MOdifier) domain 102 156 IPR023780 -
Pte1g02397 1424 Pfam Chromo (CHRromatin Organisation MOdifier) domain 192 239 IPR023780 -
Pte1g02397 1424 Gene3D - 527 751 IPR027417 -
Pte1g02397 1424 SMART helicmild6 636 720 IPR001650 -
Pte1g02397 1424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 272 517 IPR027417 -
Pte1g02397 1424 Gene3D - 1033 1216 - -
Pte1g02397 1424 Gene3D - 281 526 IPR038718 -
Pte1g02397 1424 Pfam CHD subfamily II, DUF1087 846 900 IPR009463 -
Pte1g02397 1424 MobiDBLite consensus disorder prediction 1337 1360 - -
Pte1g02397 1424 MobiDBLite consensus disorder prediction 1337 1424 - -
Pte1g02397 1424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 97 IPR013083 -
Pte1g02397 1424 Gene3D - 98 188 - -
Pte1g02397 1424 ProSiteProfiles Zinc finger PHD-type profile. 51 98 IPR019787 -
Pte1g02397 1424 Gene3D - 189 240 - -
Pte1g02397 1424 SMART PHD_3 53 96 IPR001965 -
Pte1g02397 1424 SUPERFAMILY Chromo domain-like 66 175 IPR016197 -
Pte1g02397 1424 CDD CD2_tandem 189 240 - -
Pte1g02397 1424 SMART DUF1086_2 905 1074 IPR009462 GO:0003677|GO:0006338
Pte1g02397 1424 Pfam CHD subfamily II, SANT-like domain 930 1050 IPR009462 GO:0003677|GO:0006338
Pte1g02397 1424 SUPERFAMILY Chromo domain-like 178 245 IPR016197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02397 Pte-Chr1 44638333 44654185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02397 306 781 RAD5 or RAD16-like Gene Family AT1G02670 22.662 3.84e-29 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte1g02397 SNF2_N 1.3e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02397 K11643 - jre:109012849 2089.31