Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02396 ATGGCCAAGTGTGAAAGCAACAACATGGGCTCTTTGGTTATCGGCCAACACGATCCCACCAGAATTGCTAGCACAGCCGGGGGACATTTCCGGCAATGGTCCTCGTTCTCCGCTTCATCACTTCGTCGGAAAATAATTGAAGCTGTCAGCTGTGGTGGTAGTTCTCAATATAACAAGGATGAATTTGGCTCCGTTCCAAATTCTAAGGGGACAGAGGTCCCGGTGATTGAGAAATCAGCATTAAACGAGAAACAAAAGCCGGAGGTTGAGGTGGAGGTGGAGGAGGAGGGGAAGCGGAAGGCTGCAGCTTTGAGCTCGAAGTCTGAGTCGAAACTGAAAAATGGGAATGGGAATGCCAAGTCGGAGAAACTAATGGATCTTCTGAATTTGTCTGAGGCTGAAATCAATACTGAAGCGAGGAAGAAGATGGAAGCATTGGACGAACTGAAGCGACTGGTGAAAGAATTGCAGGAGGATGATTTGGAAACGGCGAGAACGGCTGCAAGCAAAGTGAGGCTAATGGCGAAAGAAGAGTCGGAAGTGAGAGGAACACTCGCAATGCTTGGAGCCATCCCACCTCTGGTTGGATTATTGGATTTGGAAGATGTTGATTCTCAGAAAGCTTCTCTCTATGCATTGCTCAATCTTGGGATCGGAAATGAAGCGAACAAAGCTGCCATTGTCAAGGCAGGGGCCATTCACAAGATCCTAAAGATTATCGAATCCCCGAGTGCACCAAACTCATCAGTTTCTGAAGCAATTGTTGCCAATTTCCTCGGATTGAGTGCATTGGATGCTAACAAAGTCATTATTGGATCCTCTGGAGCAATGCCTTTCTTGGTTAAAGCCCTTCAGAATATAGAATCTCAGGGTAGCTTGCAGATCACCCAAGATGCAATCAGAGCACTATACAATCTCTCAATCTTCCCCGCCAACATTTCATTCATGTTGGAAACTAATTTGGTTCCCTTTCTGTTGAATAGCATCGGAAACATGGAAGTCAGCGAAAGAATCCTTGCGATATTGAGTAATTTAGTATCAACTTCAGAGGGTCGGAAAGCAATCAGCATAGTGCCAGATGCATTTTCAATTCTTGTTGATGTATTGAATTGGACAGACTCGCCAGGGTGCCAAGAAAAGGCATCATATATTCTGATGGTTATGGCACACAAATCTTATGGTGATAGACAGGCCATGATAGAGGCAGGGATTGCATCTTCATTGCTTGAGTTAACACTTCTGGGAAGCGCTTTAGCACAGAAGAGGGCATCTAGGCTCTTGGAATATTTAAGAGTAGATAAAGGGAAACAGGTTTCGCAAAATTACAGTACCAACTTGATTGGAAATGTAACTGCTCCTAATAGTGGCTCTGCGTCTTCCTCAACAAATCCAATTGCCCAAGCAAATGAGTCTAATGAAGATGAAGATACGATGAGCTTGGAAAAGAAAGCAGTTAAGCATTTAGTCCAGCAGAGCTTGCAAAATAACATGAGGAGAATTGTCAAGAGAGCAAATTTGCCTCAAGATTTTGTTCCATCAGATCACCTGAAATCACTCACTTCCAGTTCGACTTCGAAGAGCTTGCCATTCTGA 1593 0.4438 MAKCESNNMGSLVIGQHDPTRIASTAGGHFRQWSSFSASSLRRKIIEAVSCGGSSQYNKDEFGSVPNSKGTEVPVIEKSALNEKQKPEVEVEVEEEGKRKAAALSSKSESKLKNGNGNAKSEKLMDLLNLSEAEINTEARKKMEALDELKRLVKELQEDDLETARTAASKVRLMAKEESEVRGTLAMLGAIPPLVGLLDLEDVDSQKASLYALLNLGIGNEANKAAIVKAGAIHKILKIIESPSAPNSSVSEAIVANFLGLSALDANKVIIGSSGAMPFLVKALQNIESQGSLQITQDAIRALYNLSIFPANISFMLETNLVPFLLNSIGNMEVSERILAILSNLVSTSEGRKAISIVPDAFSILVDVLNWTDSPGCQEKASYILMVMAHKSYGDRQAMIEAGIASSLLELTLLGSALAQKRASRLLEYLRVDKGKQVSQNYSTNLIGNVTAPNSGSASSSTNPIAQANESNEDEDTMSLEKKAVKHLVQQSLQNNMRRIVKRANLPQDFVPSDHLKSLTSSSTSKSLPF* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02396 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 189 231 IPR000225 GO:0005515
Pte1g02396 530 MobiDBLite consensus disorder prediction 452 473 - -
Pte1g02396 530 Gene3D - 103 523 IPR011989 -
Pte1g02396 530 MobiDBLite consensus disorder prediction 511 530 - -
Pte1g02396 530 MobiDBLite consensus disorder prediction 452 478 - -
Pte1g02396 530 SUPERFAMILY ARM repeat 148 435 IPR016024 -
Pte1g02396 530 Coils Coil 135 162 - -
Pte1g02396 530 MobiDBLite consensus disorder prediction 79 106 - -
Pte1g02396 530 MobiDBLite consensus disorder prediction 78 118 - -
Pte1g02396 530 MobiDBLite consensus disorder prediction 514 530 - -
Pte1g02396 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 275 307 IPR000225 GO:0005515
Pte1g02396 530 SMART arm_5 220 263 IPR000225 GO:0005515
Pte1g02396 530 SMART arm_5 391 432 IPR000225 GO:0005515
Pte1g02396 530 SMART arm_5 178 218 IPR000225 GO:0005515
Pte1g02396 530 SMART arm_5 264 308 IPR000225 GO:0005515
Pte1g02396 530 SMART arm_5 309 347 IPR000225 GO:0005515
Pte1g02396 530 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 23 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02396 Pte-Chr1 44628822 44631324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02396 147 430 U-box Gene Family AT3G46510 37.241 5.17e-32 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02396 - - qsa:O6P43_015754 618.616