Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02368 ATGCCGCTTCCAGCGAAGGCGAGCAAGCCAGTGCAGGGACTTGTAGGCAAGGGCTCTGATGAAATGGAAATCTCGTTTAACAATCTCTGGGTCGGAAATTTGTCTGCCGATGTGACCGATACTCAACTCATGGAAATCTTCGCTCAATACGGTGCGCTCGATAGCGTTACTACCTACTCTTCACGGAGCTACGCCTTTGTGTACTTCAAACGCATCCAAGATGCTAGGGCGGCAAAAGACGCGTTGCAAGGCACTGTTTTCCGTGGAAACTCATTGAAGATCGAGTTTGCGAGACCGGCAAAGGCATGCAGAAGTTTATGGATCGGTGGTGTCAGCCCAGGTGTTGCAAAGGAGGAATTGGAACAACAATTTCTTAAATTTGGAAAAATTGAAGATTTCCGCTTAATAAGAGACAGAAACACTGCATTTGTTGATTATTTTAGCGTGGAAGATGCTACTCGAGCAATGAAAAACATGAATGGAAAGCGCGTAGGTGGAAACCAAATTCGCGTGGATTTTTTGCGGTCACAACCAACAAGAAGAGAGCAGTGGGTTGATTCTAGAGATGCAAAGTTTCTGGTAAGAAACGTGACTGCTTCAGATCTCCATGCTGGTCAGAAAAGACCGCAGCAATATTCTCAAACTCCTATGTGTAGAAAAGGGGATCATCAACCAAGCAAGATCTTGTGGATTGGATACCCTCCCTCTGTTGAAATTGATGAGCAAATGCTTCATAATGCTATGATTTTATTTGGTGAAATAGAGAAAATTAAATGTTACCCTTCCAGACATTATTCATTTGTTGAGTTTAGAAGTGTGGATGAAGCTAAACGTGCTAAAGAGGGTCTGCAAGGTCGACTTTTCAATGATCCCCTGATCACTATAATGTTCTCAAACAGCGAACTTGCTCCAGGAACTGGTTATCCTATTTTGTATCCCGGAAATAAAGGGCAAAGGTCTGAGATGTTCCTGAGTGAACATCCATTGCGACATCTTCCAGTTGATAGCTTTTGTCATGATCGTGCAACAGCACAAACTGCTGGTGTTTTTGGACGAAATGCATTAATAAGGACTTTGAGTCCTCCGGGTAGTTTTGATCCGCTCCTTTCTGGTCCTGAGCTCAGTGATTTGGTTCCTGGGCATAGATTTCAGGATGGTAAAATAGGTCCAAATTGGAGAAGGCCATCCCCTCCATGTGGAATAGCTCCTTCTCCTGTATCTGGAATCATACCTCCCTCCAGATCAGCCATATCTGGTCTGCAGGATGTACTTGACACAAACCAGTTACATAGAGACTCTAAAAGGTCAAGAATAGATGGAGCCTTGTCTTTTGATGATCGTGGAGGATTATTGATTGAATACGGCCATGTTAGTGCGAGAGTTGTGGGTCGAGTTCCTAGTCCAGGTCTGCCTGAGAATGATTTTATATGGCGTGGTGTTATTGCAAAAGGGGGAACTCCTGTTTGCCATGCACGTTGCATGCCTATGGGAAAGGGTATAGGAACTGACTTTCCTGAGGTTGTTAATTGCTCGGCCAGAACGGGTTTGGATTTGCTAACCAAACACTATGCAGATGCCATTGAATTTGAGATTGTATTCTTTTTACCAGACAGTGAAGATGATTTTGCTTCCTATACTGAATTCCTGCGCTACTTGGGTGCAAAAAACCGTGCCGGTGTTGTCAAATTTGATGACGGGACCACCTTGTTTTTAGTTCCTCCTTCTGAATTCTTAACAAATATTCTAAAAGTTCCTGGATCTGAACGTCTATATGGTGTTCTTCTGAAGTTTCCACCTGCTCCTAGTTCTGCATCTGTACAGCAAACCACTCAGTTGCCTCATTCTGAAAGATTGCAGTTTCCTCCTCGCCAAGGTGATTACAGTTTAATACCTTCAAAAGAGGAAAATTTTCTGCCAGAGTACAACAGATGTGTACATGATGACTCGAAGTTTCTTCCAAAATCTTTTTACCCACCAGTAACAGTGTCGCCTGCAATGCAATCAGCACCACAGGAATATGCTCTTAGTAATAAATCTTCTTCCCAAGCTGGAGTGACATTAACACCCGAGCTTATTGCCACTCTTACTTCTCTATTGCCTGCAACTACACAAGGTTCTAGTTTAGAGGGTGCCCAAGCAGCTTTAGACGCTTCAGGTAGCATACCTGATTTGATTTCAACCAGTGATGTAGACCAATCTCAGCTGTGGAGTCATGATCCACATTTTCCAAACCATACTAGTCATTCATCGCAACAATCGGACCAACCTTATGCATCAGTGTCTAACACACCTGGGCAGCCTTCACAAGTGCTTCATGGCAGTTCTCAAATCCTAGATTCCACCAACAGTCTGCAGCATCAGGGTGCAGTTTCATCCGAACCTATGACTGACTACATGGTCCCTTCTCATAGTGGTCAAGTTTCTGTTTCTACACAGGTCAGCAAGCAGTACCAGACTGCTGGTGTGCAGAAGGGCTATGGAGTGGTGCAGGGGACGGAATTCACTGCTTTTTACATTATGGAAGAGTCTTCACCGTCCAATGTTGATGTTGCCTCTTCTAATGTGGTTCATGGAGCTAATCCTTCTCAACTGGAAGATGTTATGGCATTTGCATCCAGCCATCGGATGCAAGCCCTTCAATCTGCTCCTGCAGGAGCTGACCCAGGCACTGCAGATGAAGCTGATAAGAACCAGAGGTACCAATCTACACTTGAATTTGCAGCTAATTTACTTCTCCAGATACAGCAGAAGCAGAAAACCGGAGGAAGACAAGGACCTGGGAATTGA 2787 0.4431 MPLPAKASKPVQGLVGKGSDEMEISFNNLWVGNLSADVTDTQLMEIFAQYGALDSVTTYSSRSYAFVYFKRIQDARAAKDALQGTVFRGNSLKIEFARPAKACRSLWIGGVSPGVAKEELEQQFLKFGKIEDFRLIRDRNTAFVDYFSVEDATRAMKNMNGKRVGGNQIRVDFLRSQPTRREQWVDSRDAKFLVRNVTASDLHAGQKRPQQYSQTPMCRKGDHQPSKILWIGYPPSVEIDEQMLHNAMILFGEIEKIKCYPSRHYSFVEFRSVDEAKRAKEGLQGRLFNDPLITIMFSNSELAPGTGYPILYPGNKGQRSEMFLSEHPLRHLPVDSFCHDRATAQTAGVFGRNALIRTLSPPGSFDPLLSGPELSDLVPGHRFQDGKIGPNWRRPSPPCGIAPSPVSGIIPPSRSAISGLQDVLDTNQLHRDSKRSRIDGALSFDDRGGLLIEYGHVSARVVGRVPSPGLPENDFIWRGVIAKGGTPVCHARCMPMGKGIGTDFPEVVNCSARTGLDLLTKHYADAIEFEIVFFLPDSEDDFASYTEFLRYLGAKNRAGVVKFDDGTTLFLVPPSEFLTNILKVPGSERLYGVLLKFPPAPSSASVQQTTQLPHSERLQFPPRQGDYSLIPSKEENFLPEYNRCVHDDSKFLPKSFYPPVTVSPAMQSAPQEYALSNKSSSQAGVTLTPELIATLTSLLPATTQGSSLEGAQAALDASGSIPDLISTSDVDQSQLWSHDPHFPNHTSHSSQQSDQPYASVSNTPGQPSQVLHGSSQILDSTNSLQHQGAVSSEPMTDYMVPSHSGQVSVSTQVSKQYQTAGVQKGYGVVQGTEFTAFYIMEESSPSNVDVASSNVVHGANPSQLEDVMAFASSHRMQALQSAPAGADPGTADEADKNQRYQSTLEFAANLLLQIQQKQKTGGRQGPGN* 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02368 928 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 227 300 IPR000504 GO:0003723
Pte1g02368 928 SMART rrm1_1 105 172 IPR000504 GO:0003723
Pte1g02368 928 SMART rrm1_1 28 95 IPR000504 GO:0003723
Pte1g02368 928 SMART rrm1_1 228 296 IPR000504 GO:0003723
Pte1g02368 928 PANTHER RNA RECOGNITION MOTIF-CONTAINING 25 97 - -
Pte1g02368 928 CDD RRM_SF 29 95 - -
Pte1g02368 928 MobiDBLite consensus disorder prediction 875 899 - -
Pte1g02368 928 Pfam SPOC domain 472 587 IPR012921 -
Pte1g02368 928 Gene3D - 220 306 IPR012677 -
Pte1g02368 928 SUPERFAMILY RNA-binding domain, RBD 103 182 IPR035979 GO:0003676
Pte1g02368 928 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 176 IPR000504 GO:0003723
Pte1g02368 928 Gene3D - 102 184 IPR012677 -
Pte1g02368 928 Gene3D - 17 101 IPR012677 -
Pte1g02368 928 MobiDBLite consensus disorder prediction 730 773 - -
Pte1g02368 928 SUPERFAMILY RNA-binding domain, RBD 21 100 IPR035979 GO:0003676
Pte1g02368 928 SUPERFAMILY RNA-binding domain, RBD 212 300 IPR035979 GO:0003676
Pte1g02368 928 CDD RRM_SF 106 172 - -
Pte1g02368 928 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 99 IPR000504 GO:0003723
Pte1g02368 928 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 238 290 IPR000504 GO:0003723
Pte1g02368 928 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 29 93 IPR000504 GO:0003723
Pte1g02368 928 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 170 IPR000504 GO:0003723
Pte1g02368 928 FunFam Flowering time control protein FPA 19 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02368 Pte-Chr1 44446450 44454100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02368 28 290 Eukaryotic Initiation Factors Gene Family AT2G23350 23.509 1.55e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02368 - - qsa:O6P43_000058 1095.88