Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02321 ATGGCAGAAGCGACTTTCCTTCACATTCATGAACTAAATGACCACATATACCTTCCTGAAATGGATCCCATTCTCTTTCGACATCATAATGACTTCGACCTCTACGCTTCCGATTCAGAATTCCCACCCTCTGATCGCTTGCTCCATCCCCATTCTGTTACTCATGAAGATGACTTATCTGATCATTTCGACTGTGCTTCCATTGCCGTACGAGGTTTGGAAGACTTCTCCGACCATGATTCCATCTCAAATCCCGATCTTTTTGACCGACAAAACCAGGTAAATTTCGTTATGGATTTGTTTCAGCAGCGAGTAGAGCAGTCTCAGGTACTGGGAAATAATGATTTAGACTTTGAAGCCCTTAACGATTCGACTTTTGGTTTTATTGAGGGGAATTCTGATGTGGGTATCGATGGGTTGGGAGTCGATTTAGGGTTTGGAATAGGAATTGATGTAGAACCTGTGGATTGGGATGACAATTGCTTGTTTATGGGTGACCGCTATGGGGGTGATCAAAATGTCTACGACGACGACTATTTCTTTTTTGAAAGGATGGCTTCTGTATCCATAAATGGGCAGCGTCCCTCCATGTTTCGTCTGGTACGACCCTATGAGAACGGCGCGGGGAATGTTGGGTTTGAGTCCGATTCGGATGAGGAAGAGAGTGATGTTTTGGAGATATGTATCAACTCTGAGGATGAGTGTGACGTCCACGAGGCCAATGATGACGGGGTGAGCATATCTCTCTTTCGAGATTCGCTTCAATTGGATGATCATAGAGACACTAATGAAGATTTTGAATGGGAGGAAGTGGATGATCGAGTTGATGAGAGAGATGTTTTGACCTTGTTAACAGCTGAGGATGAGAGGACTGTCTCTCTTTCTATTTCACCTACAGGTGGGACTCAAGAAGAAGAAGATGTCAGCACAGTGAGGGTTGTAGGCAGGGAAAGTTTGGAATGGGAAGTTTTGTTGAGTCCCAATAATTTAGGCAACACCATGGATGTGGACCATGCTACTGAGGCTTATTTGGGCGAGCAGTATGACTATTTTAACACAGCTGAGTACGACATGATGTTTGGGCAATTTGCTGATAATGAAAACCCTCTTACTGGACGGTCTCCAGCTGCCAAATCTGTTGTTCAGAATCTTCCTTCTGTAGTTTTCTCTAAAGAAGATGTTGAGAATGATAAGCCTCTCTGTGCAATTTGTAAAGAAGACTTCAATGTTGGAGAACATGCAAAAAAGTTAGCTTGTGGACATCGCTACCATGGTGACTGCATCATACCATGGTTGGATATTAGAAATACATGCCCGGTTTGTCGATACGAGTGTCCTACTGATGCTGCTGCACATGAGTCCAGGGGAACTCGTGGATCTGGTGGCTTGCGATCCGAAGACTTCACTCATATACTATTTGAACCTTGA 1428 0.4405 MAEATFLHIHELNDHIYLPEMDPILFRHHNDFDLYASDSEFPPSDRLLHPHSVTHEDDLSDHFDCASIAVRGLEDFSDHDSISNPDLFDRQNQVNFVMDLFQQRVEQSQVLGNNDLDFEALNDSTFGFIEGNSDVGIDGLGVDLGFGIGIDVEPVDWDDNCLFMGDRYGGDQNVYDDDYFFFERMASVSINGQRPSMFRLVRPYENGAGNVGFESDSDEEESDVLEICINSEDECDVHEANDDGVSISLFRDSLQLDDHRDTNEDFEWEEVDDRVDERDVLTLLTAEDERTVSLSISPTGGTQEEEDVSTVRVVGRESLEWEVLLSPNNLGNTMDVDHATEAYLGEQYDYFNTAEYDMMFGQFADNENPLTGRSPAAKSVVQNLPSVVFSKEDVENDKPLCAICKEDFNVGEHAKKLACGHRYHGDCIIPWLDIRNTCPVCRYECPTDAAAHESRGTRGSGGLRSEDFTHILFEP* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02321 475 SMART ring_2 401 441 IPR001841 -
Pte1g02321 475 SUPERFAMILY RING/U-box 380 448 - -
Pte1g02321 475 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 362 448 IPR013083 -
Pte1g02321 475 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 272 446 - -
Pte1g02321 475 ProSiteProfiles Zinc finger RING-type profile. 401 442 IPR001841 -
Pte1g02321 475 FunFam E3 ubiquitin-protein ligase RING1-like 362 448 - -
Pte1g02321 475 Pfam Ring finger domain 401 442 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02321 Pte-Chr1 43872771 43874198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02321 244 448 C3H Transcription Factor Family AT5G60820 43.779 2.26e-43 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02321 - - qsa:O6P43_002270 475.707