Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02309 ATGGGAAGGGGTAGAGTTGAGCTTAAGAGGATAGAGAACAAAATCAACAGGCAGGTAACGTTTACCAAGAGAAGAAATGGACTGCTCAAGAAGGCATACGAACTTTCTGTACTTTGTGATGCTGAAGTTGCCCTCATTATTTTCTCTAACCGTGGCAAGCTTTATGAGTTCTGCAGCACCTCCAACATGATGAAAACACTTGAAAAATACCAGAAGTGCAGCTACGGTTCATTAGAGGCCAATCGAAGTGTGGCTGATACCCAGCAGAATAGCTATCAGGAGTACTTAAAACTGAAAACAAAGGTAGAGGTCCTGCAACGTTCACAAAGGAACCTTCTGGGGGAAGATCTTGCCTCACTGGGAACGAAAGATCTTGAGCAACTTGAGCACCAGCTAGAGGCTTCTTTGAAGCAAATTAGATCAACAAAGACTCAGTTCATGCTTGATCAACTTGCTGATCTTCACAATCGGTTGGAAGAAAGTAGCTCCCAATTTCCTCTAAGACTAGGTTGGGAAGGCGGGGGTGAGCAGAACTTCCACTACAGCCGCTTAATGCCTTCACAATCAGAAGGGCTATTTCAGCCCTTGGAAGTAAATTCCAGCTTGCAACATGGTTACACCCCTTTGGGTTCTGAAGAAGCAAATGTTGGAACTTTGCTACACGTCAATGGATTCATTCCAGGATGGATGCTTTGA 696 0.444 MGRGRVELKRIENKINRQVTFTKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTSNMMKTLEKYQKCSYGSLEANRSVADTQQNSYQEYLKLKTKVEVLQRSQRNLLGEDLASLGTKDLEQLEHQLEASLKQIRSTKTQFMLDQLADLHNRLEESSSQFPLRLGWEGGGEQNFHYSRLMPSQSEGLFQPLEVNSSLQHGYTPLGSEEANVGTLLHVNGFIPGWML* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02309 231 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte1g02309 231 Coils Coil 125 145 - -
Pte1g02309 231 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte1g02309 231 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte1g02309 231 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte1g02309 231 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 160 - -
Pte1g02309 231 Pfam K-box region 85 159 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte1g02309 231 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Pte1g02309 231 Gene3D - 13 103 IPR036879 GO:0003677|GO:0046983
Pte1g02309 231 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Pte1g02309 231 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte1g02309 231 ProSiteProfiles K-box domain profile. 88 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte1g02309 231 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte1g02309 231 FunFam MADS-box transcription factor 1 13 90 - -
Pte1g02309 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02309 Pte-Chr1 43793879 43797921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02309 1 232 MADS-box Gene Family AT5G15800 59.470 1.03e-94 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte1g02309 K-box 6.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02309 K09264 - nnu:104597886 331.643