Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02298 ATGGCCAAATCGGTGACTCCTGATGGCTTATCAATGTTACTAGCCAACCCATCACCGGATTCCTCTTCTGAAATTCCAGAGATTGTAGTTCAAGTCGTTGATCTCAAGCAAAGCGGCAACAGATACATGTTTTCTGCTAGTGATGGGAAAATGAAGCTAAGAGCTATTTTGCCATCAAGTCAGAATACTCAAGTTCTGTCAGGAAGTATTCAGAATCTGGGTCTTATCAAAATACAGGATTACACTCTCAATGACATTCCAAACAAGTCAGAAAAATATTTAATTGTCACAAAATGTGAGCCGGTATCCCCTGCCCTAGAGGCCGAGTTGAAGAGTGATGCAGCATCTGGCATTCTTTTGAAGCCAAAACAAGAAGAGGGATACAAAAGTGAAGTAACTGAAGGTCCCGGCATTATTTTGAAACCAAAGCCAGAAATTGTTTCCAAATCAGCTGCTCAAATAGTGAATGAACAGCATCAGAATTCCGCACCATCTGCTCGTTTGGCAATGACACGTAGAGTTCGTCCTCTTGTCTCCTTAAATCCATACCAAGGTAGTTGGACCATAAAAGTTCGTGTGACAAACAAAGGGATCATGAGGTTCTACAAGAATGCCAGAGGGGAAGGTTGTGTCTTCAACGTGGAGTTGACAGACGAAGATGGTACACAAATCCAAGCTACAATGTTTAACGAAGTTGCAAAGAAGTTGTATGAAAAGTTTGAGCTGGGCAAGGTTTATTTCATTTCAAAAGGGACACTTAAAGTTGCCAACAAACAGTTTAAAACTGTTCAAAACGATTATGAGATGACGTTAAATGAGAACTCTGAAGTGGAAGAGGCAAGCAATGAAGCAAGTTTTGTGCCTGAAACAAAATTCAGTTTTGTCCCTATCGATCAGTTGGGACCTTACGTCAATGGGAGGGAACTTGTGGATATCATTGGAGTAGTACAAAATGTGTCTCCTACAACGAGTATCAGGAGAAAGATCAATAATGAGACAATACCAAAGCGCGATATTACTGTTGCCGATGAAACTAAGAAGACAGTCGTTGTCTCTTTATGGAATGAGCACGCCACAACAGTTGGGCAGGAGTTGTTGGATTTGGCTGATAAGTCTCCCGTGGTTGCAATTAAGTCTGTCAAAGTTGGAGACTTTCAAGGCGTGACTTTGTCCACGCTTAGCAGAAGTGTCGTCCTGGTAAATCCAGAGTTACCTGAAGCTAAGAAGCTTAAGTCCTGGTATGACTCTGAAGGTAAGGAGACTTCTATGGCCTCCGTCAGCTCTAGTTTGAGTCCATCATCCAAGAGTGGCGGAAGATCAATGTATTCGGATCGTGTCTCACTTTCTCACATAATATCAAACGCATCACTGGGGGAGGATAAGCCTGCATATTTCAGTGTTAGAGCCCACATAAGTTTTATCAAGCCTGAGCAAACGATGTGGTATCGTGCTTGCAAAACATGCAACAAGAAAGTTACAGAAGCCATAGGTTCTGGCTATTGGTGTGAGGGGTGCCAGAAAAATGAGGAGGATTGCAATCTGAGATACATAATGGTTGTGAGAGTTTCGGATGCAAGTGGTGAAGCTTGGGTCTCTGTCTTCAACGACGAGGCAGAAAGAATTATTGGTTGCTCTGCTAATGAGCTTGATAACCTCAAATCTCAGGACGGAGAAGAAAATCCATATCAACTGAAGTTGAAAGAGGCAACTTGGGTTCCTCATCTTTTCCGGGTTTGCGTTTCTCAACACGAGTATATGCATGAAAAGAGGCAAAGGTTAACTGCAAGGGGTGTTGCTCCTGTTGATTTTGCTGCTGAATCTAGATTTCTTCTAGAAGAGATTTCAAAGATGACAGCTGTTCACTAG 1866 0.4239 MAKSVTPDGLSMLLANPSPDSSSEIPEIVVQVVDLKQSGNRYMFSASDGKMKLRAILPSSQNTQVLSGSIQNLGLIKIQDYTLNDIPNKSEKYLIVTKCEPVSPALEAELKSDAASGILLKPKQEEGYKSEVTEGPGIILKPKPEIVSKSAAQIVNEQHQNSAPSARLAMTRRVRPLVSLNPYQGSWTIKVRVTNKGIMRFYKNARGEGCVFNVELTDEDGTQIQATMFNEVAKKLYEKFELGKVYFISKGTLKVANKQFKTVQNDYEMTLNENSEVEEASNEASFVPETKFSFVPIDQLGPYVNGRELVDIIGVVQNVSPTTSIRRKINNETIPKRDITVADETKKTVVVSLWNEHATTVGQELLDLADKSPVVAIKSVKVGDFQGVTLSTLSRSVVLVNPELPEAKKLKSWYDSEGKETSMASVSSSLSPSSKSGGRSMYSDRVSLSHIISNASLGEDKPAYFSVRAHISFIKPEQTMWYRACKTCNKKVTEAIGSGYWCEGCQKNEEDCNLRYIMVVRVSDASGEAWVSVFNDEAERIIGCSANELDNLKSQDGEENPYQLKLKEATWVPHLFRVCVSQHEYMHEKRQRLTARGVAPVDFAAESRFLLEEISKMTAVH* 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02298 621 CDD RPA1_DBD_A 176 279 - -
Pte1g02298 621 Gene3D - 287 427 IPR012340 -
Pte1g02298 621 FunFam Replication protein A subunit 173 282 - -
Pte1g02298 621 CDD RPA1_DBD_B 309 415 - -
Pte1g02298 621 MobiDBLite consensus disorder prediction 1 22 - -
Pte1g02298 621 SUPERFAMILY Nucleic acid-binding proteins 1 106 IPR012340 -
Pte1g02298 621 SUPERFAMILY Nucleic acid-binding proteins 292 420 IPR012340 -
Pte1g02298 621 Gene3D - 5 111 IPR012340 -
Pte1g02298 621 Gene3D - 428 617 IPR012340 -
Pte1g02298 621 SUPERFAMILY Nucleic acid-binding proteins 175 283 IPR012340 -
Pte1g02298 621 Gene3D - 173 282 IPR012340 -
Pte1g02298 621 Pfam Replication factor-A C terminal domain 464 610 IPR013955 -
Pte1g02298 621 Pfam OB-fold nucleic acid binding domain 187 273 IPR004365 GO:0003676
Pte1g02298 621 NCBIfam replication factor-a protein 1 (rpa1) 19 616 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pte1g02298 621 SUPERFAMILY Nucleic acid-binding proteins 443 617 IPR012340 -
Pte1g02298 621 Pfam Replication factor-A protein 1, N-terminal domain 5 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Pte1g02298 621 CDD RPA1_DBD_C 452 616 IPR047192 -
Pte1g02298 621 FunFam Replication protein A subunit 4 114 - -
Pte1g02298 621 FunFam Replication protein A subunit 430 617 - -
Pte1g02298 621 Coils Coil 535 555 - -
Pte1g02298 621 FunFam Replication protein A subunit 286 425 - -
Pte1g02298 621 PANTHER REPLICATION FACTOR A 1, RFA1 187 578 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pte1g02298 621 Pfam Replication protein A OB domain 306 401 IPR031657 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02298 Pte-Chr1 43701170 43704392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02298 1 616 Core DNA Replication Machinery Family AT5G08020 69.044 0.0 917
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02298 K07466 - qsa:O6P43_002222 984.171