Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02296 ATGGCTTTTCTTAATAAAGTTGGTAATATTCTGAGGCAGACGGTGAACAGGCAGATCAACTGTGAAGTCCGTTCGGCATCCATTTTCGCATCGATAAGATGCATGTCCACTTATACATCGCCCAAACTTTTTGTCGGAGGATTATCATATAATACCGACGAAGCATCTCTGAGGCAAGAGTTTGCAAAATATGGCGAAGTTGTGGAGGCGAGAATAATTCAGGACCGTGAGACCGGTAGGTCCAGAGGATTTGGCTTCGTTACTTTCACCAGCGTCGAGGAGGCGTCAAGTGCCTCTCAAGCTCTAGATGGGAAGGATCTTGACGGCCGCCGAGTGAGAGTAAATTTTGCTACTGAAAGGCCTCGCACATATGGTGGTGGATATGGGGGTGCAGGTGGTGGCTTTAGTGATGGATATGGCAATGCACCATATGGTGGTGGTGGAGGTGGTGGATATGGTGGTGGAGGATATGGTGGTGCTGGTGGAGGTGGTGGATATGGTGATAGAGGTAGCTTTGGAAGTGGTACTGGTGGAGGATATGGGGACAGTGGGACATATGGTGGTGGTGCTAGAGGAGGATATGGTGGTGGTGCTAATCCAGGTGGCAATTATGGAGGTCCTGCTGCTGGAGGCAATTACGAAGGTGGTGGAAGTGGTTCCAGTTATGCCGGCAGTGACAGCAGTTTTGGCACTGGTGGAAGCAGTGATACACTAGGCAATGCTAGTGGTTTTGGTAGCAGCAATACCTTCGATAATAATTTTGCTAACGCTGGCTCCACGGGGGACCAGTTTGCTGATACTGGATTTGGCGAAAGCACTGGCAGCAGTGGAATTAAAAATGGCAGTGATCAGTTAGGAAACGATGATAGCAGCGATGTCGAAGAGGCTGGAAATGATGATAACCACGGAGACTATGAAAATGACACAGACGAATTTGCCAAAAGGGCTTGA 951 0.4879 MAFLNKVGNILRQTVNRQINCEVRSASIFASIRCMSTYTSPKLFVGGLSYNTDEASLRQEFAKYGEVVEARIIQDRETGRSRGFGFVTFTSVEEASSASQALDGKDLDGRRVRVNFATERPRTYGGGYGGAGGGFSDGYGNAPYGGGGGGGYGGGGYGGAGGGGGYGDRGSFGSGTGGGYGDSGTYGGGARGGYGGGANPGGNYGGPAAGGNYEGGGSGSSYAGSDSSFGTGGSSDTLGNASGFGSSNTFDNNFANAGSTGDQFADTGFGESTGSSGIKNGSDQLGNDDSSDVEEAGNDDNHGDYENDTDEFAKRA* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02296 316 MobiDBLite consensus disorder prediction 210 316 - -
Pte1g02296 316 MobiDBLite consensus disorder prediction 218 287 - -
Pte1g02296 316 SUPERFAMILY RNA-binding domain, RBD 37 132 IPR035979 GO:0003676
Pte1g02296 316 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 33 212 - -
Pte1g02296 316 MobiDBLite consensus disorder prediction 296 316 - -
Pte1g02296 316 CDD RRM2_NsCP33_like 42 117 - -
Pte1g02296 316 SMART rrm1_1 42 115 IPR000504 GO:0003723
Pte1g02296 316 Gene3D - 31 136 IPR012677 -
Pte1g02296 316 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 119 IPR000504 GO:0003723
Pte1g02296 316 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 113 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02296 Pte-Chr1 43677288 43680358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02296 43 158 Eukaryotic Initiation Factors Gene Family AT3G16380 31.092 2.88e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02296 K12741 - twl:119987514 178.718