Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte1g02296 | ATGGCTTTTCTTAATAAAGTTGGTAATATTCTGAGGCAGACGGTGAACAGGCAGATCAACTGTGAAGTCCGTTCGGCATCCATTTTCGCATCGATAAGATGCATGTCCACTTATACATCGCCCAAACTTTTTGTCGGAGGATTATCATATAATACCGACGAAGCATCTCTGAGGCAAGAGTTTGCAAAATATGGCGAAGTTGTGGAGGCGAGAATAATTCAGGACCGTGAGACCGGTAGGTCCAGAGGATTTGGCTTCGTTACTTTCACCAGCGTCGAGGAGGCGTCAAGTGCCTCTCAAGCTCTAGATGGGAAGGATCTTGACGGCCGCCGAGTGAGAGTAAATTTTGCTACTGAAAGGCCTCGCACATATGGTGGTGGATATGGGGGTGCAGGTGGTGGCTTTAGTGATGGATATGGCAATGCACCATATGGTGGTGGTGGAGGTGGTGGATATGGTGGTGGAGGATATGGTGGTGCTGGTGGAGGTGGTGGATATGGTGATAGAGGTAGCTTTGGAAGTGGTACTGGTGGAGGATATGGGGACAGTGGGACATATGGTGGTGGTGCTAGAGGAGGATATGGTGGTGGTGCTAATCCAGGTGGCAATTATGGAGGTCCTGCTGCTGGAGGCAATTACGAAGGTGGTGGAAGTGGTTCCAGTTATGCCGGCAGTGACAGCAGTTTTGGCACTGGTGGAAGCAGTGATACACTAGGCAATGCTAGTGGTTTTGGTAGCAGCAATACCTTCGATAATAATTTTGCTAACGCTGGCTCCACGGGGGACCAGTTTGCTGATACTGGATTTGGCGAAAGCACTGGCAGCAGTGGAATTAAAAATGGCAGTGATCAGTTAGGAAACGATGATAGCAGCGATGTCGAAGAGGCTGGAAATGATGATAACCACGGAGACTATGAAAATGACACAGACGAATTTGCCAAAAGGGCTTGA | 951 | 0.4879 | MAFLNKVGNILRQTVNRQINCEVRSASIFASIRCMSTYTSPKLFVGGLSYNTDEASLRQEFAKYGEVVEARIIQDRETGRSRGFGFVTFTSVEEASSASQALDGKDLDGRRVRVNFATERPRTYGGGYGGAGGGFSDGYGNAPYGGGGGGGYGGGGYGGAGGGGGYGDRGSFGSGTGGGYGDSGTYGGGARGGYGGGANPGGNYGGPAAGGNYEGGGSGSSYAGSDSSFGTGGSSDTLGNASGFGSSNTFDNNFANAGSTGDQFADTGFGESTGSSGIKNGSDQLGNDDSSDVEEAGNDDNHGDYENDTDEFAKRA* | 317 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte1g02296 | 316 | MobiDBLite | consensus disorder prediction | 210 | 316 | - | - | |
Pte1g02296 | 316 | MobiDBLite | consensus disorder prediction | 218 | 287 | - | - | |
Pte1g02296 | 316 | SUPERFAMILY | RNA-binding domain, RBD | 37 | 132 | IPR035979 | GO:0003676 | |
Pte1g02296 | 316 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED | 33 | 212 | - | - | |
Pte1g02296 | 316 | MobiDBLite | consensus disorder prediction | 296 | 316 | - | - | |
Pte1g02296 | 316 | CDD | RRM2_NsCP33_like | 42 | 117 | - | - | |
Pte1g02296 | 316 | SMART | rrm1_1 | 42 | 115 | IPR000504 | GO:0003723 | |
Pte1g02296 | 316 | Gene3D | - | 31 | 136 | IPR012677 | - | |
Pte1g02296 | 316 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 41 | 119 | IPR000504 | GO:0003723 | |
Pte1g02296 | 316 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 43 | 113 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte1g02296 | Pte-Chr1 | 43677288 | 43680358 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte1g02296 | 43 | 158 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 31.092 | 2.88e-11 | 62.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte1g02296 | K12741 | - | twl:119987514 | 178.718 |