Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02290 ATGGCTTTTCTTAATAAAGTTGGTAATATTCTGAGGCAGACGGTGAACAGGCAGATCAACTGTGAAGTCCGTTCTGCATCCATTTTCGCATCAATAAGATGCATGTCCACTTATACATCGCCCAAACTTTTTGTCGGAGGATTATCATATAATACCGACGAAGCATCTCTGAGGCAAGAGTTTGCAAAATATGGCGAAGTTGTGGAGGCGAGAATAATTCAGGACCGTGAGACGGGTAGGTCCAGTGGATTTGGCTTCGTTACTTTCACCAGCGTCGAGGAGGCGTCAAGTGCCTCTCAAGCTCTAGATGGGAAGGATCTTGACGGCCACCGAGTGAGAGTAAATTTTGCTACTGAAAGGCCTCGCACATATGGTGGTGGATATGGGGGTGCAGGTGGTGGCTTTAGTGATGGATATGGCAATGCACCATATGGTGGTGGTGGATATGGTGGTGCTGGTGGAGGTGGTGTCGGTAGCTTTGGAAGTGGTGCTGGTGGAGGATATGGGGACAGCGGGACATATGGTGGTGGTGCTAGAGGAGGATATGGTGGTGGTTCTAATCCAGGTGGCAATTATGGAGGTCCTGCTGCTGGAGGCAATCACGAAGGTGGTGGAAGTGGTTCCAGTTATGCCGGCAGTGACAGCAGTATTGGTACTGGTGGAAGCAGTGATACACTAGGCAATGCTAGTGGTCTTGGTAGCAGCAATACCTTCGATAATAATCTCGCAAACGCTGGCTCCATGGGGGGCCAGTTTGCTGATACTGGATTTGGCGAAAGCACGGGCAGCAGTGAAAAGATGCGTTACTTTCGTTCAATTTTCTCAACTCTCTCAACTGACAAACAAATGGAGTCTAAAAATGTCAGTGACCGGTTCAGAAATTATGATAACAGCGATTGGAGTGATGGCGAGGAAGACTATAAAAATTCCGCATACTATGAGCGAATTTTGATGTGTGATTGGCAAGGTGCCCGAAGCATATTGCATTGGAATATGAGAAATGGAATTCGAAACTCCCATTTGTTTAAACGGCGGTTCGGACCAAAGGGAAAGTAG 1056 0.4754 MAFLNKVGNILRQTVNRQINCEVRSASIFASIRCMSTYTSPKLFVGGLSYNTDEASLRQEFAKYGEVVEARIIQDRETGRSSGFGFVTFTSVEEASSASQALDGKDLDGHRVRVNFATERPRTYGGGYGGAGGGFSDGYGNAPYGGGGYGGAGGGGVGSFGSGAGGGYGDSGTYGGGARGGYGGGSNPGGNYGGPAAGGNHEGGGSGSSYAGSDSSIGTGGSSDTLGNASGLGSSNTFDNNLANAGSMGGQFADTGFGESTGSSEKMRYFRSIFSTLSTDKQMESKNVSDRFRNYDNSDWSDGEEDYKNSAYYERILMCDWQGARSILHWNMRNGIRNSHLFKRRFGPKGK* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02290 351 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 119 IPR000504 GO:0003723
Pte1g02290 351 SMART rrm1_1 42 115 IPR000504 GO:0003723
Pte1g02290 351 SUPERFAMILY RNA-binding domain, RBD 40 151 IPR035979 GO:0003676
Pte1g02290 351 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 33 208 - -
Pte1g02290 351 CDD RRM2_NsCP33_like 42 117 - -
Pte1g02290 351 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 113 IPR000504 GO:0003723
Pte1g02290 351 MobiDBLite consensus disorder prediction 206 224 - -
Pte1g02290 351 Gene3D - 35 141 IPR012677 -
Pte1g02290 351 MobiDBLite consensus disorder prediction 193 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02290 Pte-Chr1 43637121 43639309 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02290 43 159 Eukaryotic Initiation Factors Gene Family AT3G16380 32.283 2.23e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02290 K12741 - twl:119987514 174.481