Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02281 ATGGATAATAGGTTGGTGGGGAAATCAGATAACAGTGTTGTACCATCTACATCGTTCAAAAGGACCAGAACACCCAATAGTGGGATCCAAGCCCCTTCTTGTTTAGTCGATGAGTGCAGTTCGGACCTAAGTAAATGCAGAGATTATCATCGGCGCCACAAAGTTTGTGAGCATCATTCGAAGACTCCAAAGGTCACAATCAAAGGCCAGGAGCAACGGTTCTGCCAGCAGTGCAGCAGGTTCCATTTGCTGGTAGAATTCGATGAAGGAAAAAGAAGCTGCCGCAAACGCCTTGACGGGCACAACAGACGCCGGAGGAAACCCCAACCTGAACCGCTCTCTGCAAGTTCGGCACGATTTCTCGAAAATTACAAAGCAGGTGCCAGATTTCTGGCATTTGATAATCCACAAGCCTCCGTAACAGGTAGTTCTTCATGGACGGAACAATTGAAAGCCAAGAATGATCACGTGCTTTGCAACAGTCCTGCACAAATCAACTTCAATGACAGAACTATAACTATCCCTGAATGCGATGAAGAACAAAAGCAATTCTCTTTTCTTCAGGGCACAGGTTCCACATATCCTGCTTATTCTTCCTCTCAACTTGGTCATGGTGCCAATTTACTGTCAGGCTGCACTGCCAGAAGCCAAAAGACTTTCTCAAACACGTTAAACGGAGCAATCCAATCAGACTGTGCTCTCTCTCTTCTGTCATCAACACCTGCCGTGACTCATGAGTTTGGCTTCACGCGCACATTGCAGCCAAGGGCGATTCCTCCAGCTCGGTCCATTATCCCCAGCTTCTGTGATTTGGGTATGGAGGGTGAGTCGACTAATCCAGTTTTCCTTGGTGGTAGCAGTAGCAATTCTGAGCTTCAATGCCACGGGATGTTTCATGTTGGACCAGATGGTTCCTCTTCAAGTGGCTCTCACCAGAAATCTTTCTCCTGGGAGTAG 957 0.4734 MDNRLVGKSDNSVVPSTSFKRTRTPNSGIQAPSCLVDECSSDLSKCRDYHRRHKVCEHHSKTPKVTIKGQEQRFCQQCSRFHLLVEFDEGKRSCRKRLDGHNRRRRKPQPEPLSASSARFLENYKAGARFLAFDNPQASVTGSSSWTEQLKAKNDHVLCNSPAQINFNDRTITIPECDEEQKQFSFLQGTGSTYPAYSSSQLGHGANLLSGCTARSQKTFSNTLNGAIQSDCALSLLSSTPAVTHEFGFTRTLQPRAIPPARSIIPSFCDLGMEGESTNPVFLGGSSSNSELQCHGMFHVGPDGSSSSGSHQKSFSWE* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02281 318 FunFam Squamosa promoter-binding-like protein 14 25 95 - -
Pte1g02281 318 MobiDBLite consensus disorder prediction 1 26 - -
Pte1g02281 318 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 301 IPR044817 GO:0003677
Pte1g02281 318 MobiDBLite consensus disorder prediction 303 318 - -
Pte1g02281 318 SUPERFAMILY SBT domain 32 113 IPR036893 GO:0003677|GO:0005634
Pte1g02281 318 MobiDBLite consensus disorder prediction 9 26 - -
Pte1g02281 318 ProSiteProfiles Zinc finger SBP-type profile. 31 108 IPR004333 GO:0003677
Pte1g02281 318 MobiDBLite consensus disorder prediction 298 318 - -
Pte1g02281 318 Gene3D - 25 95 IPR036893 GO:0003677|GO:0005634
Pte1g02281 318 Pfam SBP domain 34 107 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02281 Pte-Chr1 43555455 43558197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02281 30 188 SBP-box Gene Family AT5G50670 49.718 4.15e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pte1g02281 SBP 1.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02281 - - vvi:100243827 313.153