Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02280 ATGGGAAGAGGACGAGTGGAGTTGAAGAGGATTGAGAACAAGATCAACAGGCAGGTGACATTTGCTAAGCGAAGGAACGGACTTTTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGCGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAACTCTGGAGAGGTACCAGAAAAGCAATTACGGAGCACCTGAAACCAACATTTCTACAAGGGAGGCCTTGAAAAGAATATAG 276 0.4457 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKSNYGAPETNISTREALKRI* 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02280 91 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Pte1g02280 91 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte1g02280 91 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte1g02280 91 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte1g02280 91 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte1g02280 91 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Pte1g02280 91 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte1g02280 91 FunFam MADS-box transcription factor 1 13 86 - -
Pte1g02280 91 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte1g02280 91 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 77 - -
Pte1g02280 91 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pte1g02280 91 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02280 Pte-Chr1 43545123 43547912 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02280 1 88 MADS-box Gene Family AT1G24260 93.182 3.93e-56 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pte1g02280 SRF-TF 3.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02280 - - cpap:110816023 172.17