Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02279 ATGCATACACAAGTTTCAGATGCAAGAGACATTAATGAAACAGCTCCCACTGGGAAGCGTCCTAGAGACGAAGAAACCTTTGCGTTTCCCGCAAAGCTTAAAGGAGTTGTCTCGCAACGGAGTGGACAATGGGCTGCAGAAATTTATGTTAACAGTCACATGATTTGGCTAGGGACGTTTGGTTCAGAGGAGGAAGCTGCAACGGCATATGACAGTGCAGCAATCAAAATTCAAAGTGGAGAATTTCAAAGAAACTTTCCACGGACTGAACCAAAATCTCAAGAGCCATGTGAGACCAAATGCAATGAGGAGGCTTTATTCAACATGATAAGAGATGGATCATCTCAATCCAAATTCTCTTATTTTCTCTGGCTTCAAACCCAGAATGGGAAAATACAACAGGGACATAATCTCACAGCCAAGGATATAAATGGAAATGGAAAGTTCAAGTGTAGGCATCTATTTCACAAAGTGCTGACACCAAGTGATGTCGGCAAGTTAAACAGACTTGTCATACCCATAAAATATGCTTTAAAATATTTCCCTTGCATTCAAGAAAGTCAAGATTGTGTAGATGGCGGAAAACAAAGTGACATGCAGCTTGCTTTCTATGACAGATTGATGAAGTCCTGGAACTTCCGGTATTGCTATTGGAGAAGCAGTCAAAGTTTTGTCTTCACAAGAGGTTGGAACCGCTTCGTTAAAGAAAAAGAATTGCAGGCAAAGGATATCGTTGTTTTCTACGAATGTGTGAGCATTGAAAAAGAAAGAGCAGGTCAGAGTTTACCGCTAATTGATGTATGTTATCACCAGGACAAGAACTATAGTCATATGGACTATGTCGATGAGAATAAGAAAATTTTGAGCCAGCAGATTAATGTGAAGAGATGTATCAAGAAAAGCAAACATGCATTGCTTGGAGAGAAAGCAGAAAATAGCAGAAATGTGAAGCTCTTTGGTGTGAAGATCGACTGA 975 0.401 MHTQVSDARDINETAPTGKRPRDEETFAFPAKLKGVVSQRSGQWAAEIYVNSHMIWLGTFGSEEEAATAYDSAAIKIQSGEFQRNFPRTEPKSQEPCETKCNEEALFNMIRDGSSQSKFSYFLWLQTQNGKIQQGHNLTAKDINGNGKFKCRHLFHKVLTPSDVGKLNRLVIPIKYALKYFPCIQESQDCVDGGKQSDMQLAFYDRLMKSWNFRYCYWRSSQSFVFTRGWNRFVKEKELQAKDIVVFYECVSIEKERAGQSLPLIDVCYHQDKNYSHMDYVDENKKILSQQINVKRCIKKSKHALLGEKAENSRNVKLFGVKID* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02279 324 SUPERFAMILY DNA-binding domain 32 87 IPR016177 GO:0003677
Pte1g02279 324 CDD AP2 31 87 IPR001471 GO:0003700|GO:0006355
Pte1g02279 324 SMART rav1_2 32 93 IPR001471 GO:0003700|GO:0006355
Pte1g02279 324 SMART B3_2 155 271 IPR003340 GO:0003677
Pte1g02279 324 ProSiteProfiles B3 DNA-binding domain profile. 155 271 IPR003340 GO:0003677
Pte1g02279 324 ProSiteProfiles AP2/ERF domain profile. 32 87 IPR001471 GO:0003700|GO:0006355
Pte1g02279 324 Pfam AP2 domain 33 77 IPR001471 GO:0003700|GO:0006355
Pte1g02279 324 Gene3D AP2/ERF domain 32 88 IPR036955 GO:0003700|GO:0006355
Pte1g02279 324 Pfam B3 DNA binding domain 155 248 IPR003340 GO:0003677
Pte1g02279 324 SUPERFAMILY DNA-binding pseudobarrel domain 153 248 IPR015300 -
Pte1g02279 324 CDD B3_DNA 153 248 IPR003340 GO:0003677
Pte1g02279 324 MobiDBLite consensus disorder prediction 1 25 - -
Pte1g02279 324 Gene3D - 149 278 IPR015300 -
Pte1g02279 324 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 32 323 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02279 Pte-Chr1 43543680 43544654 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02279 20 325 RAV Transcription Factor Family AT1G51120 44.207 3.09e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Pte1g02279 B3 9.1e-24 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02279 K09287 - qsu:111998385 280.796