Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02270 ATGGCCATGGGGACTGTGGTAAAGAACTCTGCACAATATTGTGATGATCAGGATCAGTACATATTCCGCAGTCGGTATCCCGCAGTTCCGGTACCGGAGAATGTGACACTGCCTGAATTTGTGCTTCAAAATGCCGAACAGTATGCAGACAAGGTAGCATTTGTTGAGGTTGTGACAGGAAAACTAGTTACTTACAAAGATGTTGTGCGGGACACAAACAGGTTTGCTAAGGCCTTGAGGGCTATTGGGATTAGGAAGGGACATGTTGTGATCGTAGCACTGCCAAATGTTGCAGAATATGCCATTGTTGCTCTTGGGATCATGTCTGCTGGGGGTGTTTTTTCAGGTGTAAACCCAACTTCACATGTTTCAGAAATCAAGAAGCAGATGGAAGCTGCTGACGCCAAACTTATTGTCACTAATGGCCCCAACTATGAAAAGGTGAAAGCTCTAGAACTACCAATTGTGGTTCTAGGTGAGGAGAACATTGAAAATGCAATGAATTGGAGCAAATTGCTTGAAGCAGCAGATCGTGTAGGCAGTGATTCAAACAAGGAAGTCATATTACAGACTGATTTATGTGCCATGCCATTTTCATCAGGCACGACAGGACTGCCCAAGGGTGTCATGCTGACACATCAAAATCTTGTGGCTAACCTCTGCTCTACACTCTTTGGTGTAGCACCTGAAATGGTGGGTGAAGTCACCACACTGGGGTTAATCCCCTTCTTCCACATATATGGGATTACTGGGATTTGCTGTGCCACTCTTAGGAACAAAGGGAAAGTTGTAGTGATGGGAAGATTTGAATTGAGGACTTTTCTAAATGCTTTGATCACACATGAGGTCACATTTGCCCCAATTGTACCCCCAATTATATTGAGCTTGGTGAAAAGTCCAGTTGTTGATGAGTTTGATCTCAGCAAGCTCAAACTCCAAGCAGTTATGACTGCAGCAGCTCCATTAGCAGCAGAGCTCCTCAGTGCCTTTGAGAACAAATTCCCTGGTGTCCAAGTCCATGAGGCATATGGGTTAACTGAGCACAGTTGCATCACATTGACTCATGCACACCCAGAAAGAGGGTTTGGTCCTGCGAAGAAAAGTTCTGTCGGGTTCATCCTTCCAAACTTGGAAGTGAAATTCATTGATCCTGACACTGGTAGGTCTCTCCCAAAGAACACTCACGGCGAGCTTTGTGTCAGAAGCCAGTGTGTCATGCAAGGGTATTATGGCAATGAAGAGGAGACAGCACAAACCATCGATGAAAAAGGCTGGCTTCACACAGGTGATATTGGATATATAGATGCAGATGACAGCATATTCATTGTTGATCGCATTAAGGAACTAATCAAGTTCAAAGGATTCCAAGTTGCTCCTGCTGAGCTAGAGGCGATTCTTCTGTCTCATCCCTCCATTGAAGACGCTGCTGTTGTGCCGCTGCCTGATGAGGAAGCTGGGGAGATCCCTGGTGCAAGTGTCGTGATGAGCAAAGGTGCAAAAGAGACTGAAGAGGACATCGTGAGCTTCGTAGCCTCCCATGTTGCACATTACAAGAAGGTCAGAGTTGTAAAATTTGTGGACTCCATCCCAAAATCCCCTTCTGGCAAAATCGTGAGAAGACTCGTTAAAGAAAAAATGGTTGAAAAAAAATCAGACTGA 1659 0.4509 MAMGTVVKNSAQYCDDQDQYIFRSRYPAVPVPENVTLPEFVLQNAEQYADKVAFVEVVTGKLVTYKDVVRDTNRFAKALRAIGIRKGHVVIVALPNVAEYAIVALGIMSAGGVFSGVNPTSHVSEIKKQMEAADAKLIVTNGPNYEKVKALELPIVVLGEENIENAMNWSKLLEAADRVGSDSNKEVILQTDLCAMPFSSGTTGLPKGVMLTHQNLVANLCSTLFGVAPEMVGEVTTLGLIPFFHIYGITGICCATLRNKGKVVVMGRFELRTFLNALITHEVTFAPIVPPIILSLVKSPVVDEFDLSKLKLQAVMTAAAPLAAELLSAFENKFPGVQVHEAYGLTEHSCITLTHAHPERGFGPAKKSSVGFILPNLEVKFIDPDTGRSLPKNTHGELCVRSQCVMQGYYGNEEETAQTIDEKGWLHTGDIGYIDADDSIFIVDRIKELIKFKGFQVAPAELEAILLSHPSIEDAAVVPLPDEEAGEIPGASVVMSKGAKETEEDIVSFVASHVAHYKKVRVVKFVDSIPKSPSGKIVRRLVKEKMVEKKSD* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02270 552 CDD 4CL 31 540 - -
Pte1g02270 552 ProSitePatterns Putative AMP-binding domain signature. 196 207 IPR020845 -
Pte1g02270 552 Gene3D - 448 550 IPR045851 -
Pte1g02270 552 FunFam Long-chain-fatty-acid--CoA ligase FadD 23 447 - -
Pte1g02270 552 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 17 545 - -
Pte1g02270 552 Pfam AMP-binding enzyme C-terminal domain 461 536 IPR025110 -
Pte1g02270 552 FunFam 4-coumarate--CoA ligase 2 448 549 - -
Pte1g02270 552 Pfam AMP-binding enzyme 43 452 IPR000873 -
Pte1g02270 552 SUPERFAMILY Acetyl-CoA synthetase-like 21 548 - -
Pte1g02270 552 Gene3D - 19 447 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02270 Pte-Chr1 43488093 43490637 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02270 16 547 Monolignol Biosynthesis Gene Families AT1G62940 75.376 0.0 822
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02270 K01904 - qsu:112038127 870.152