Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02269 ATGCTGATGGAGTGGAATGCTTGTCCTCCATTTCAATGGGATTGGGAACACCTGTTTATGCTAAATCCAAAGTCAACTGAATACTCAAAGTTGCAACCAACGGACTGGTTTGGTGAGGTGGACAGAGATATTAATGCTAGGTCCTTCTATCTGTCATGGGGAGGTGCTGGCTCTGGATCTGATCAACTCCATTCATCAAAGAGCTCAAAAACAGCCTCCATCAACTCATCATCAATTGATGAAAGTAAAACTTCAAAGTTGACCTTTCAAGGTATACAAGAAGATTCTAGTGGCAAGGAAGATGTATCTAAGGATGAACCAAATGAAAGTTCTCGAGCAATTGAACCCTCTAGCTCTGGCGAGCCTTTACTCAGTCTAAAGCTTGGGAAACGGCTTTATTTTGAGGATGTTTGCCCAGAAAATGATTTCAATTCCACATCTATCTCTGCGATTCCTATTTCAACCTCAAGTACAGCAAAGAAATGTGGGTCAAATATTAGAAGCAACCAACCACCATGCTGTCAGGTGGAAGGCTGCAATCTCGACCTTTCTTCTGCTAAAGACTACCATCGTAAACACAGAGTTTGTGAAAGTCATTCCAAGTCATCTAAAGTAGTTGTATGTGGTTTGGAAAGACGGTTTTGCCAGCAGTGTAGTAGGTTCCATGATCTTTGTGAGTTCGACGAGAAAAAGCGCAGTTGCCGAAAGCGTCTCTCTGATCACAATGCAAGACGTCGCAAGCCACACTCTGAAGCTGTGCGTTTCAGATCAAGCTTGGGTTCGACGGCATATGCTGCAGGGCATAGGCAACAACCAAACCCATTGGCTTATTCTGGCTCATATTCAAGCTTAGTATGGCAAGATACATGCTGCAAGCACGTCCAGCCCAAAGAATTCTTCATGAAATCTGCAAACGGAGTACCAACCAGTGGACAGTTGCAGTTTTCTGGTACTGAGCCGCACGTTAATCCTAAGTTCTCCGATGGCCCCTTTGGAATGTTACCGTTAAAAAGCACAACAGCTGGGACGGCCACCAATCAAGGGGAGACTGTGACTGCCACCGATCCTAGTGCTTCACAAACATTCCATCGTGCTCTCTCTCTTCTGTCAACTAACTCGTGGGATCAGTGTGAAACAAAACATGTTGGGCTGGTTCGCTCCCGTCAGACAGCACCTTCCGGGATTACTCAGCCTGCTATGCAAACTACAGCACATGTTTCCCCTATTCATTCGTCCGAACATTGGCTCAACGAGCAACACTACATTGGTTCAGACATCTCCATCTTGAATGCAGGATCCGGCACCAGTCGTTTCCAAGATTTTCAGCTGATATGA 1335 0.4532 MLMEWNACPPFQWDWEHLFMLNPKSTEYSKLQPTDWFGEVDRDINARSFYLSWGGAGSGSDQLHSSKSSKTASINSSSIDESKTSKLTFQGIQEDSSGKEDVSKDEPNESSRAIEPSSSGEPLLSLKLGKRLYFEDVCPENDFNSTSISAIPISTSSTAKKCGSNIRSNQPPCCQVEGCNLDLSSAKDYHRKHRVCESHSKSSKVVVCGLERRFCQQCSRFHDLCEFDEKKRSCRKRLSDHNARRRKPHSEAVRFRSSLGSTAYAAGHRQQPNPLAYSGSYSSLVWQDTCCKHVQPKEFFMKSANGVPTSGQLQFSGTEPHVNPKFSDGPFGMLPLKSTTAGTATNQGETVTATDPSASQTFHRALSLLSTNSWDQCETKHVGLVRSRQTAPSGITQPAMQTTAHVSPIHSSEHWLNEQHYIGSDISILNAGSGTSRFQDFQLI* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02269 444 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 56 388 IPR044817 GO:0003677
Pte1g02269 444 SUPERFAMILY SBT domain 171 252 IPR036893 GO:0003677|GO:0005634
Pte1g02269 444 MobiDBLite consensus disorder prediction 57 121 - -
Pte1g02269 444 Gene3D - 165 235 IPR036893 GO:0003677|GO:0005634
Pte1g02269 444 ProSiteProfiles Zinc finger SBP-type profile. 171 248 IPR004333 GO:0003677
Pte1g02269 444 MobiDBLite consensus disorder prediction 58 96 - -
Pte1g02269 444 MobiDBLite consensus disorder prediction 97 111 - -
Pte1g02269 444 FunFam Squamosa promoter-binding-like protein 14 165 235 - -
Pte1g02269 444 Pfam SBP domain 174 247 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02269 Pte-Chr1 43483041 43487424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02269 3 373 SBP-box Gene Family AT5G43270 39.541 3.35e-59 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pte1g02269 SBP 5.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02269 - - qsa:O6P43_023841 406.371