Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02240 ATGGATGTTGCTGAGGTTGAAGAAAGTTTGTTTGCAGCCAGTGACGCCAAGTTACACAGTGAAATGTGCAAGACTCTCTCCACAATATATTGCAAAATATTGTCAATTTTTCCAACCCTTGAAGCAGCACGTCCGAGGAGTAAATCTGGTATTCAGGCATTATGTTCTTTGCATGTGGCACTTGAGAAGTCCAAGACTGTTCTTCAGCATTGTTCAGAATGTAGTAAACTTTACTTGGCAATAACAGGTGATTCTGTTGTTCTAAAATTTGAGAAAGCCAAATCTGCTCTTAAAGATAGTCTTCAACGTGTGGAGGATATTGTTCCACAATCTATTGGTTGCCAGATTGAGGAAATTACAAATGAGCTTGAGGCTTCAGTGTTTTCTCTTGATCCCATAGAGAAGCAAATCGGCGATAATTTAATTGGGCTGCTCCAGCAGGGAAGAAACTTCAACGAGTCTAGTGACACTAGTGAGCTAGAGTCTTTTCACCAGGCTGCTACGAAACTCGGAATTACATCTTCAAGAGCTGCCCTTGCAGAAAGAAGAGCTCTGAAGAAACTCATAGAAAGGGCTCGTTCAGAGGAAGATAAGAGGAAGGAATCAATTGTTGCATACCTTTTACATCTGATGAGGAAGTACTCAAAGTTATTCAGAAGTGAAGTCTCAGATGACAATGATTCACAAGGTTCTTCGCCTTGTTCTCCTACTGTCAAGGGAACTCTTGAAGATATTGCTGCTGGCATCCTTTGTCACTCCTTTGATCGACAGCTTTCAAAACTAAGTTCCTTCAATTTTAAACCAAAAAATAGAAGATCAGGGCAGATGCCTTATCCTCCTGAGGAGTTGAAGTGTCCAATATCCCTGCAGCTTATGTATGATCCTGTCATCATTGCTTCCGGGCAGACATATGAAAGGATTTGCATAGAGAAATGGTTCAGCGATGGGCATAACACCTGCCCAAAGACTCAGCAGCAGCTCCCACATCTTTCATTGACTCCTAATTACTGTGTTAAGGGGCTTGTAGCTAGTTGGTGTGAACAGCATGGTGTTCCAGTTCCTGATGGTCCCCCAGAGTCTCTTGATTTGAACTATTGGAGATTGGCTATCTCGGAGTCTGAGTTTGTAAACTCCAGACCGGTGGGCAGTGTTAATTCTGGCATGTTGAAGGGTGTCAAGGTGGTTCCCTTGGAGGAAAATGATATCATGGAGGAAGCTGAAGGAAATGAACCTGAAAATGTGTCTGAACATGAGGAAACTTCTGAAGATTTGGGAAGTTTTCTGACAGCATTGAATGAAGAGAATGACATGAAAAAGCAATGCAGGGTAGTTGAAAAAATAAGGTTCTTGCTAAAAGATGATGAAGAAGCCAGGATCTATATGGGCGCCAATGGATTTGTTGAAGCACTTCTACAATTTCTGCAGTCAGCCGTGCATAAAGGCGATGTGGTGGCTCAAGAAAGTGGAGCAATGGCAATGTTCAATCTAGCAGTGAACAATAACAGGAACAAGGAAATAATGTTGGAAGCTGGAGTTATATCATTGTTGGAGGAAATGATTTCTGTCTCCATAACCCATGGATGTGCGACTGCCCTACTTCTTAATATATCCTGCCTTGAAAAGGCTAAGCCTATAATTGGCACAAGCCCTGCTGTTCCTTTTCTAATTCAGCTTCTTACAGCCAAAATTGAACCGCTGTGCAAGCTTGATGCACTCCATACACTTTATAATCTATCTACATGTCATTCCAATATTCCGAACCTCCTATTAGCTGGTATGACTAGCTCCCTTCAATCACTTCTAGCTAACCCTGGAGAAAATACATGGACTGAGAAGTGCCTTGCTGTTTTGATAAATTTGGCCTCTAGTCAACTGGGGAGAGAGCAAATGATCTCAACTGATGGACTTATAGGTTGCCTGGCTGCAATATTGGACATGGGTGAACCAGTAGAGCAGGAGCAAGCTGTTTCATGTCTTTTAATTTTGTGTAATAGGAGTGAGGATTGTTGTCAGATGGTCCTCCAAGAAGGTGTAATACCTGCATTGGTGTCTATCTCAGCTAATGGAACCTCGAGGGGGAGAGAAAAGTCTGAAAAACTCTTGATGTTATTCCGGGAACAAAGACAACGAGAACACTTGCCGATCGAGAAAAACCATCCATCAGCAGAAACAAGTAGTAGCATGCCAATGCCCACTCCAGAAGCAAAGCCAATGTGCAAATCAATGTCAAAAAGAAAGATGGGGAAAGCTTTTAGCTTTCTGTGGAAAAGCAAGAGCTATTCAGTTTACCAATGTTAG 2298 0.4221 MDVAEVEESLFAASDAKLHSEMCKTLSTIYCKILSIFPTLEAARPRSKSGIQALCSLHVALEKSKTVLQHCSECSKLYLAITGDSVVLKFEKAKSALKDSLQRVEDIVPQSIGCQIEEITNELEASVFSLDPIEKQIGDNLIGLLQQGRNFNESSDTSELESFHQAATKLGITSSRAALAERRALKKLIERARSEEDKRKESIVAYLLHLMRKYSKLFRSEVSDDNDSQGSSPCSPTVKGTLEDIAAGILCHSFDRQLSKLSSFNFKPKNRRSGQMPYPPEELKCPISLQLMYDPVIIASGQTYERICIEKWFSDGHNTCPKTQQQLPHLSLTPNYCVKGLVASWCEQHGVPVPDGPPESLDLNYWRLAISESEFVNSRPVGSVNSGMLKGVKVVPLEENDIMEEAEGNEPENVSEHEETSEDLGSFLTALNEENDMKKQCRVVEKIRFLLKDDEEARIYMGANGFVEALLQFLQSAVHKGDVVAQESGAMAMFNLAVNNNRNKEIMLEAGVISLLEEMISVSITHGCATALLLNISCLEKAKPIIGTSPAVPFLIQLLTAKIEPLCKLDALHTLYNLSTCHSNIPNLLLAGMTSSLQSLLANPGENTWTEKCLAVLINLASSQLGREQMISTDGLIGCLAAILDMGEPVEQEQAVSCLLILCNRSEDCCQMVLQEGVIPALVSISANGTSRGREKSEKLLMLFREQRQREHLPIEKNHPSAETSSSMPMPTPEAKPMCKSMSKRKMGKAFSFLWKSKSYSVYQC* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02240 765 SMART arm_5 454 498 IPR000225 GO:0005515
Pte1g02240 765 SMART arm_5 539 580 IPR000225 GO:0005515
Pte1g02240 765 SMART arm_5 581 622 IPR000225 GO:0005515
Pte1g02240 765 SMART arm_5 500 538 IPR000225 GO:0005515
Pte1g02240 765 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Pte1g02240 765 CDD RING-Ubox_PUB 280 332 IPR045210 -
Pte1g02240 765 PANTHER U BOX DOMAIN-CONTAINING 20 706 - -
Pte1g02240 765 SUPERFAMILY ARM repeat 423 688 IPR016024 -
Pte1g02240 765 Gene3D - 398 714 IPR011989 -
Pte1g02240 765 FunFam RING-type E3 ubiquitin transferase 278 352 - -
Pte1g02240 765 Coils Coil 175 195 - -
Pte1g02240 765 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 352 IPR013083 -
Pte1g02240 765 SUPERFAMILY RING/U-box 275 355 - -
Pte1g02240 765 MobiDBLite consensus disorder prediction 712 741 - -
Pte1g02240 765 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Pte1g02240 765 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 465 511 IPR000225 GO:0005515
Pte1g02240 765 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02240 Pte-Chr1 43257022 43260714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02240 1 764 U-box Gene Family AT1G24330 66.067 0.0 1029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02240 - - gmx:100804344 1118.99