Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02232 ATGGATTCTGACTCTGATTCAGACGGATCTCATGTCTCCGCTACTCCCCCACGACAATCAAACCTTCCATCTCCGCCGTCACCACCACCACCTCCGCCGCTGCAGCGTTTTCAGATATTTCTCTCTTCCCACAAGTCAAGAGTTCGGAGTAAAGGTTCTTCATCCTCAACCTTAAAACCAGTTTCAAAGCTTCGAAAACCTCTGTCCAGGTCAACCAAAAAAAGGCCAACCGATCCAAAGCCCGAACCCTTACACGAAGCCATCTATGACCATCAATTTTCTCTCCCTGCGCTGCCATTTCAAATCCTTCGTCCGCTTGATCGGATTCCCGCAACCGCCAGTGATTGTATCGAAAACCTTCCTGCTGGATTTTTCTCGAAGTTCGCTTCCTTCTCTAAATCTCAGAGGCCATTTCTCAATATAGAACCTTCACAAAGTAAGCCGTGTCCGAGCCCAAGGTCCGATACGTCGCAGTTCAAGATTGAAATGGAAAAGTGTGATCCGGAAAAATTGGGTAATCCCGTTACGAAAGAAGCTGGTACTGTGAAGAGCTCACTTGGTGTTACAAAAAAACATCTAAATCTCATCGGAGCTAACCCACCAATGCCACCTGCTAAGTTGAAAAAATGTGGGGGTGAAGGCAACTTCGTGAAGCTCAACTTGAATGGCAAGAGACGGAAGTTTGTGAACAAGGGTAACAAGAAAAGATTTAAATACGCATCGGGCAGTTATAGAGGTTATAGAAGAGGCAGAAAGAACTGGAAAAATGAAGACAATGATGAAAATGAAGGGGTTATTGAAGAAGATGGTTTGGTCATCGAGACCTCAAAGCAGAAGCAGAGGGTCGTCGGCAAAAAAAGTGAATCTAACTCTGCTAGTTTGATAGAAGAAGTTGTTTTGGCAACTAGAGAAAAGCCGTCAGTAGAGAATTTGGAGAAGTTGTTGAAATTGGCGTTTGGTTATGATTCTTTTCGTGACGGGCAAATGGAGGCGATACAGCTTTTGCTTTCTGGGAAGTCAGCCATGCTCGTTTTGCCCACTGGTGCGGGAAAATCCTTGTGTTATCAATTACCTGCGATAGTTTTGCCTGGGATTACCTTGGTTGTTAGTCCGTTGGTAGCATTGATGATTGATCAGCTCAAACAGCTGCCTCCTATAATTTCGGGCGGTCTTCTGTGTAGCAGCCAGATGCCTGACGAAGTTTCGGAGACAATAAAGCAGCTTCAAGAAGGCAAACTAAAGGTGGTGCTCTTTGTTTCACCAGAGAGATTCTTGAATCCGGGTTTCCTGTCAACCATCTCTGCTGTTTCTATAATATCACTTGTCGTGATTGATGAAGCTCACTGCATATCTGAGTGGTCCCACAATTTTCGCCCTTCATTCATGAGGCTCAGATCATCCTTGCTTCGTACTAGGCTCAATGTCAGTTGCATCCTTGCTATGACAGCAACAGCAACAACCCCCACTTTGGATGCTATCATGTCTGCGCTAGATATTCCTCGTACCAATCTTACAAAGAAAGCTCATTTACGGCCAAATTTGCAAATGTCAGTATCGTTAACATCAAATAGTAGAATGAAAGACCTGTTGAAGTTGGTCAAGTCTCCTCCTTTCATTGATGCTCAGAGCATCATTATATACTGTAAATTTCAGTCAGAAGCAGATCTAGTAAGTGGATTCTTGTGTGATAACAATATCTCTGCAAAGAGTTATCACAGTGGAATACCTACAAAAGAACGGAATCGAGTTCAGGAATTATTCTGCACAAACAAGATCAAAGTGGTAGTTGCAACAGTGGCATTTGGCATGGGACTTGACAAAAAGGATGTTGGAGCTGTGATCCATTATAGTTTGCCAGAAAGCCTTGAGGAATATGTACAGGAGATTGGACGCGCTGGCAGGGATGGAAGGTTGTCCTATTGCCATCTTTTTTACAATGATGAGACATACTTCAAACTTCGGAGTCTGATGCATAGTGATGGTGTCGACGTAAATGCTGTGAACAAGTTTCTCTGTCAAGTGTTTTCCTTTGAAAATGATGCCCGTGGCAAAATATGTTCACTAGTAAAAGAAACAGCTGCACGCAAGTTTGACATGAAAGATGAGGTGATGCTCACACTTTTAACACGCTTGGAGTTAGGTGATGTGCAATACTTATGTTTACTTCCACAACAAAATGTGACTTGCATATTGAATTTTCATAAGACAGCCCCATCATTGCTAGCTGAAAAGAATTCTGTTGTTTCTGCAATTCTGAAGAGGTCTGAGAATAAGCATGGGCAGTATGAGTTTAACATACCCACTGTGGCAAATAGTATCGGAATTGCAACAAGTGATTTGTCAAATCAACTGCAAAGTCTAAAGTTGGTGGGAGAAATAACTTACGAGTTGAAGGACCTTGCCTTTTGCTATACTCTGATTGAGGTTCCCACAGATATCCTTTCTCTGTCGGGACAGCTAACAGGATGGTTATCAGACGTTGAAAACTGCAAGGTACGAAAACTGGATGCACTCTTTGATGCTGTGTGTTATGCACTGAATAAGTGTGATAGAATGCACGGATGCAGTGGTGCCCAGCACACACAATGCTTGCAGAAAAAGATATCTGATTATTTCAATGAAATGGATAGCTGTGAATTCTCGAAGAAGACAGTTCAGAGCAGCCCTTTTCTGCGAGCAGACATAAAGGTATTTCTTCAGAGCAATTCGCATTATAAGTTCACACCCAGAGCCATAGCTAGGATCATGCATGGAATTGGAAGCCCATCCTATCCCTCTTCAATTTGGGGCAGAACTCACTTCTGGGGAAGGTATGTCCAAACAGACTTTCACTTGGTGATGGAAGCAGCAAAGGCAGAGCTAATGAATTTTATTGGGAAGGAGATCCTCTAG 2892 0.4315 MDSDSDSDGSHVSATPPRQSNLPSPPSPPPPPPLQRFQIFLSSHKSRVRSKGSSSSTLKPVSKLRKPLSRSTKKRPTDPKPEPLHEAIYDHQFSLPALPFQILRPLDRIPATASDCIENLPAGFFSKFASFSKSQRPFLNIEPSQSKPCPSPRSDTSQFKIEMEKCDPEKLGNPVTKEAGTVKSSLGVTKKHLNLIGANPPMPPAKLKKCGGEGNFVKLNLNGKRRKFVNKGNKKRFKYASGSYRGYRRGRKNWKNEDNDENEGVIEEDGLVIETSKQKQRVVGKKSESNSASLIEEVVLATREKPSVENLEKLLKLAFGYDSFRDGQMEAIQLLLSGKSAMLVLPTGAGKSLCYQLPAIVLPGITLVVSPLVALMIDQLKQLPPIISGGLLCSSQMPDEVSETIKQLQEGKLKVVLFVSPERFLNPGFLSTISAVSIISLVVIDEAHCISEWSHNFRPSFMRLRSSLLRTRLNVSCILAMTATATTPTLDAIMSALDIPRTNLTKKAHLRPNLQMSVSLTSNSRMKDLLKLVKSPPFIDAQSIIIYCKFQSEADLVSGFLCDNNISAKSYHSGIPTKERNRVQELFCTNKIKVVVATVAFGMGLDKKDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFYNDETYFKLRSLMHSDGVDVNAVNKFLCQVFSFENDARGKICSLVKETAARKFDMKDEVMLTLLTRLELGDVQYLCLLPQQNVTCILNFHKTAPSLLAEKNSVVSAILKRSENKHGQYEFNIPTVANSIGIATSDLSNQLQSLKLVGEITYELKDLAFCYTLIEVPTDILSLSGQLTGWLSDVENCKVRKLDALFDAVCYALNKCDRMHGCSGAQHTQCLQKKISDYFNEMDSCEFSKKTVQSSPFLRADIKVFLQSNSHYKFTPRAIARIMHGIGSPSYPSSIWGRTHFWGRYVQTDFHLVMEAAKAELMNFIGKEIL* 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02232 963 Pfam DEAD/DEAH box helicase 326 488 IPR011545 GO:0003676|GO:0005524
Pte1g02232 963 MobiDBLite consensus disorder prediction 1 84 - -
Pte1g02232 963 Gene3D - 511 702 IPR027417 -
Pte1g02232 963 Pfam Helicase conserved C-terminal domain 542 635 IPR001650 -
Pte1g02232 963 MobiDBLite consensus disorder prediction 19 36 - -
Pte1g02232 963 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 332 503 IPR014001 -
Pte1g02232 963 CDD SF2_C_RecQ 511 645 - -
Pte1g02232 963 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 525 682 IPR001650 -
Pte1g02232 963 FunFam ATP-dependent DNA helicase Q-like 5 511 703 - -
Pte1g02232 963 NCBIfam RecQ family ATP-dependent DNA helicase 314 680 IPR004589 GO:0004386|GO:0006310
Pte1g02232 963 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 332 650 IPR027417 -
Pte1g02232 963 MobiDBLite consensus disorder prediction 39 62 - -
Pte1g02232 963 PANTHER DNA HELICASE RECQ FAMILY MEMBER 302 846 - -
Pte1g02232 963 SMART helicmild6 555 636 IPR001650 -
Pte1g02232 963 FunFam ATP-dependent DNA helicase Q4 293 503 - -
Pte1g02232 963 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 440 449 IPR002464 -
Pte1g02232 963 Gene3D - 295 503 IPR027417 -
Pte1g02232 963 SMART ultradead3 320 509 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02232 Pte-Chr1 43212280 43219666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02232 545 637 Eukaryotic Initiation Factors Gene Family AT3G19760 33.333 2.80e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02232 K10730 - qsa:O6P43_023885 1141.33