Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02228 ATGGAAGATGAGATCAAAGCAGATTTCATCAAGAGCGGTTTTGATCTTCAAGAGGAAGAGAAAATCGTGAACAAATGTCTTGCGTTTTGCATAAACTACAACTTAAAGCCGTCTGATATCGTTTCAAGTTGGGAGCTTTACTATCTCAACAGACAATTAAATGACTCCACTGTGAACGAAGCTCAAATAGATGCGTTTTTGCTATACCTAATGAATGAGCAGAAAGAAGCAATTGTCGAAGAGGAACCTGATTTGCATGTTTACTCCAGTAAAGATGTGGATATGATATTGGAAGATGATGGTGGTGAAGATGCGAACGTAAATATTCCCAGTAGTCCAATTGATAGAACTGAAGATATTTCTGTGCATCCATCAGATTCAGCATCTCCACTAAATGGCTATGTATCATCTACTTCGAAGTTGGTGACACCTTTTGCGAAGCGAACAGAGAAGTTTTGTGTGAGATTTAGCATCAGTGAAATACAGAATGTAGAGAGTGGAAATAAGGGGCCTGATCATGACATTGATGAGGATGACTTTATCAGGAAGGTTCAACCTCGGAAAAGTTGTTCACTGATGGCACATGGATCAGGCCCCCCACCTGGTTGTAGGTTCATGTATGACCGCACTGAAGATAGATTCAATGCACTCAAGAACCGAATTGTAAACTTTACAAGGGAACTTGCAGATTCTGGGCTCTATGATGTGCCGATAGACCCAACTATTGCCTCGCAGAAAAGCTTGTTTACTGTGGGCATGATTTGTTGTGATGGAGAAGGACGTTTAAATGAGAAGTCCACCTTGTTGCAGTCCAGTGTTGAGCATGGAGGAGAATGCATTCGCTTGGAATTACATCAATTGAGCCAATATTCTATTTTTCCAGGGCAGGTAGTTGGCATGGAAGGGCATAATCCCAGTGGACATTGCTTTATTGCTTCAAAATTGGTGGATTCTACACCTTTCCCTTCTTCAGATAGGGGATATATGCATCCATTGAAGAAACAAGCTTGTGATAATGGGACTCGAGCTGCTGATGTGACTTACAATGGCAAAGAGTTATCCATGATTATCGCAGCAGGCCCTTTTACAACAACTGATAACATGCTATTTGAGCCTCTTACTGAGCTACTCGCGTATGCAAAGAAGAAGATGCCTCAGTTGCTCATATTGCTGGGGCCATTTGTTGATTCTGAGCATCCAGAGATCAAAAGGGGAACATTAGAAAGGAGCTTTGAAGGAATATTTAATTTGGAAATTCTCAGAAGGTTGCAAGACTATGCTGAAAGCATGGGGTCCAGTGGACGCGTGATTGTTGTACCTTCTATACGGGATGCCAACCACGATTTTGTTTTTCCCCAGCCTCCTTTTGACATCAATCTACCTCATGTCCAAGATCAGATAACGAGCCTCTCAAATCCTGGGATATTTGAGGCAGATCAGGTTAGAATAGCTTGCTGTACAGTGGATATTCTGAAGCACCTCAGTGCAGAGGAGATATCGCGCTATACGTCAAATGGGAAACCCAATGATCGAATGAGCAGGCTCGTGAACCATGTTCTCAACCAGAAAAGTTTCTATCCTCTGTATCCACCGGCAGAAGGTGTTCCATTGGACTTTTCACTTACTCCTGAAGCTTTTCAAATTCCATTCCTTCCAGACATTCTCATCCTACCCTCGGACATTAAGTTCTTCGTAAAGGTATTGTCTCGACGGGAAAGTGATGGAGAGGAAGATGGGACTAGGTGCATATGTATTAATCCTGGAAGGTTATCAAAGGGAGAAGGAGGAGGCACCTTTGTTGAGCTTGAGTATCGTGGTTGCCCTGGCATGATTAATGCTTCGATCATTGGCTTATGA 1857 0.426 MEDEIKADFIKSGFDLQEEEKIVNKCLAFCINYNLKPSDIVSSWELYYLNRQLNDSTVNEAQIDAFLLYLMNEQKEAIVEEEPDLHVYSSKDVDMILEDDGGEDANVNIPSSPIDRTEDISVHPSDSASPLNGYVSSTSKLVTPFAKRTEKFCVRFSISEIQNVESGNKGPDHDIDEDDFIRKVQPRKSCSLMAHGSGPPPGCRFMYDRTEDRFNALKNRIVNFTRELADSGLYDVPIDPTIASQKSLFTVGMICCDGEGRLNEKSTLLQSSVEHGGECIRLELHQLSQYSIFPGQVVGMEGHNPSGHCFIASKLVDSTPFPSSDRGYMHPLKKQACDNGTRAADVTYNGKELSMIIAAGPFTTTDNMLFEPLTELLAYAKKKMPQLLILLGPFVDSEHPEIKRGTLERSFEGIFNLEILRRLQDYAESMGSSGRVIVVPSIRDANHDFVFPQPPFDINLPHVQDQITSLSNPGIFEADQVRIACCTVDILKHLSAEEISRYTSNGKPNDRMSRLVNHVLNQKSFYPLYPPAEGVPLDFSLTPEAFQIPFLPDILILPSDIKFFVKVLSRRESDGEEDGTRCICINPGRLSKGEGGGTFVELEYRGCPGMINASIIGL* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02228 618 PIRSF DNA_pol_alpha_2 1 609 IPR016722 -
Pte1g02228 618 Gene3D - 1 75 IPR043034 -
Pte1g02228 618 Gene3D - 503 609 - -
Pte1g02228 618 Gene3D - 336 502 - -
Pte1g02228 618 Pfam DNA polymerase alpha/epsilon subunit B 356 565 IPR007185 GO:0003677|GO:0006260
Pte1g02228 618 PANTHER DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT 1 605 IPR016722 -
Pte1g02228 618 FunFam DNA polymerase alpha subunit B 336 501 - -
Pte1g02228 618 Coils Coil 207 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02228 Pte-Chr1 43178129 43188810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02228 2 619 Core DNA Replication Machinery Family AT1G67630 56.800 0.0 710
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02228 K02321 - qsa:O6P43_030564 856.284