Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02224 ATGTACTTGTCGGAGAAGCCTCGCCCGATTGATTTCTACAAAGAAGGAAGTCGAGACATGATGATGGAGGTGGTCTCTAATGGTCCTGAGCTACCACAACCACACCAAAATCAACAGCAGCAGCCGCTTATTCAGCAGCAGACTCATCTTCATCAGCACCATATGATTTTGGCTGAAAGCAGTGGAGAAGACCATGAGGTTGAGGTTGGAATCAAGGCACCTAAGAAGCGAGCTGAGACGTGGGTTCAAGACGAGACCCGTAGTTTGATTGCCCTTCGACGTGAAATGGATGGTCTCTTCAACACTTCCAAGTCCAACAAGCATCTATGGGAACAGATATCAGCAAAGATGAGAGGGAAGGGCTTCGATCGATCACCGACTATGTGCACCGATAAGTGGAGGAATCTCTTGAAGGAGTTCAAGAAGGCGAAGCACCATGATAGAGGTAGTGCTTCTGCTAAGATGTCTTATTACAAAGAAATCGATGAGATTCTTAGGGAGCGTGTAAAGAATCCTCAGTACAAGAGTATCCCTCCTCCAAAAGTTGATTCTTACATGCAATTTACTGACAAAGGAGGTATGGATGATGGCAGCATTGCCTTCGGACCGGTGGAAGCAACAGGGAGGCAATCACTTAATCTTGAGAGACGTTTGGATCACGATGGACATCCTCTGGCTATTACTGCAGCTGAAGCAGTAGCAGCAAATGGAGTTCCACCCTGGAATTGGAGAGAGACTCATGGAAATGGTAGTGAGGGTCAACCATATTGTGGGAGGGTTATCTCAGTCAAGTGGGGTGATTATACAAGAAGAATAGGCATTGATGGTACTGCAGAAGCCATCAAGGAAGCAATCAGATGTGCTTTCAGGTTGAGAAGCAGACGTGCATTTTGGTTGGAGGATGAAGACCAGATTATCAGATGCCTTGACCGTGACATGCCTTTAGGAAATTACACTCTTCATATTGATGAAGGTATGGCGATTAAGGTGTACTTGTATGACGAGTCTGACCACATTTCAGTGCATACGGAAGAGAAGATTTTTTACACTGAAGACGATTATCGTGATTTCTTGACCCGCAGGGGGTGGACATGTCTAAGAGAATTGGATGGATACAGAAACATTGACAATATGGATGATCTTCGACCTGGTGCTGTATACCGTGGTGTTAGCTAA 1176 0.4549 MYLSEKPRPIDFYKEGSRDMMMEVVSNGPELPQPHQNQQQQPLIQQQTHLHQHHMILAESSGEDHEVEVGIKAPKKRAETWVQDETRSLIALRREMDGLFNTSKSNKHLWEQISAKMRGKGFDRSPTMCTDKWRNLLKEFKKAKHHDRGSASAKMSYYKEIDEILRERVKNPQYKSIPPPKVDSYMQFTDKGGMDDGSIAFGPVEATGRQSLNLERRLDHDGHPLAITAAEAVAANGVPPWNWRETHGNGSEGQPYCGRVISVKWGDYTRRIGIDGTAEAIKEAIRCAFRLRSRRAFWLEDEDQIIRCLDRDMPLGNYTLHIDEGMAIKVYLYDESDHISVHTEEKIFYTEDDYRDFLTRRGWTCLRELDGYRNIDNMDDLRPGAVYRGVS* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02224 391 Pfam Myb/SANT-like DNA-binding domain 80 164 IPR044822 -
Pte1g02224 391 FunFam trihelix transcription factor GT-1 81 143 - -
Pte1g02224 391 Gene3D - 81 143 - -
Pte1g02224 391 SMART sant 77 139 IPR001005 -
Pte1g02224 391 ProSiteProfiles Myb-like domain profile. 73 137 IPR001005 -
Pte1g02224 391 CDD GT1 79 144 - -
Pte1g02224 391 PANTHER FI21293P1 38 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02224 Pte-Chr1 43151280 43155439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02224 44 390 Trihelix Transcription Factor Family AT3G25990 68.627 1.84e-177 497
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pte1g02224 Myb_DNA-bind_4 2.4e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02224 - - qsa:O6P43_023896 640.188