Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02220 ATGAACAATGGTTTTTCTTCTCCTCGGCATGATGCGTTTCCTGCCGGTCTGCGTGTTCTTGTCGTGGATGATGATTCTGCATGGTTGAGAATACTTGAAAAGATGCTCAAGAAATGTAAATATGAAGTGACAACATGTTGTTCTGCAACAAATGCACTGAACTTACTCCGTGAGAAAAAGGATGGCTATGACATTGTGATCAGCGATGTCAACATGCCCGATATGGATGGCTTTAAGCTTCTGGAACATGTTGGACTTGAGATGGACCTTCCTGTCATTATGATGTCTGTTGATGGAGAAACTAGCAGGGTGATGAAAGGCGTGCAGCATGGAGCGTGTGATTATCTCCTTAAACCTATTAGTATGAAAGAACTGAAAAACATATGGCTGCATGTTTTCAGAAAAAAGGTTCATGAGATTAGAGAAATTGAAAGTCAAGAAGGCTTAGATGTAAGTTTTGAAGCATTTCTACGGAGAAATGGAGTGGATCAATCTGACGATTTTCACATGCTAAGTGGAGATGAAATGAGTTCAGCGAAGAAAAGAAAGGATTTAGACAATAACCATGGCGAGAAAGACTTGTTTGACTCTTCTTCTACGAAGAAAGCAAGGGTTGTCTGGTCTGTCGATCTTCATCAAAAATTCGTTAAAGCTGTGAATCAGATTGGTTTTGACAAAGTTGGTCCCAAGAAAATACTTGATTTGATGAATGTGCCGTGGTTAACAAGAGAAAATGTTGCTAGCCACTTGCAGAAGTATCGTCTCTACTTGAGTAGGCTGCAGAAGGAAAATGATGTGAAATCTTCCTATAATGGGGTTAAGCGAGATTCACCTGCAGAAAATCCTCCTGCAAGTTTGGACATTAATACGTCAATTAACACAGAACGAAAGGTAGTTTCAATTCATGGAAACCAATTCTCTGGATGTAGCTTGAAAAGTTACAACGACAGTAAACTTGGCAATGAGTGCAATCTTATGGAGATTTCTTCAGAGTCGTTGAAAGAACCAACAGAAGTTCCTATTAGAAACAATACCGAGTCCCATGTGAGAAGGACTCACTTAAAGGGATTCAATCATCCATTCTCAAATCAAGAATCTGAAACAAGTTTTGAAACTTCTAATCGTACATTGCCAGTAGTTAACGCGTGGAGTGAAGCTCCAAGGGTTCAATTGAAACAGGAGCCACAGCATTCTGAGAACAGTTTCCATCAGCTAGCTTCGCATGGAAAGCAGCATCACATTCAAGTTAATGTACCACAAGTTCCATCCATCAACTCTACTCACGCTAGAAGAGATACCGAAACTAATCTCAAGTCTTTTAGCATCGATATCAAGGGTGATCAGCTCAGTTGTTTATGTTCAATAGATGGTAAGAGCAACATGTTAAACCAGGAACCCCAGGGACAGTTTTCTTCTTCTACTGCTGCTGCTACTGCTTTGGGTGCAAAAACACAAGGTTTTGATTTGAGTTGCATATCTGATATGGAATATCACCAAGGAAACATTTTGGCCAATGAGGGAATTTTAATGCCTCTGGACGAGGACTTGCAGTATTCATTGCTATATGGTAACCTGAACACAGTGAATTATGAAGTCCAGAACACAGATTTGTCGGAGTTCAACGATCCAGGGCTCATTGCTGATGTCCCAATCTACTTCAATGATACATTGAGGTTTGAAAGTTGGTATCCCTGCAATCCAGCAAACTACTCCTTGATTGATGAAAGTGTATAG 1734 0.4025 MNNGFSSPRHDAFPAGLRVLVVDDDSAWLRILEKMLKKCKYEVTTCCSATNALNLLREKKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPISMKELKNIWLHVFRKKVHEIREIESQEGLDVSFEAFLRRNGVDQSDDFHMLSGDEMSSAKKRKDLDNNHGEKDLFDSSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDVKSSYNGVKRDSPAENPPASLDINTSINTERKVVSIHGNQFSGCSLKSYNDSKLGNECNLMEISSESLKEPTEVPIRNNTESHVRRTHLKGFNHPFSNQESETSFETSNRTLPVVNAWSEAPRVQLKQEPQHSENSFHQLASHGKQHHIQVNVPQVPSINSTHARRDTETNLKSFSIDIKGDQLSCLCSIDGKSNMLNQEPQGQFSSSTAAATALGAKTQGFDLSCISDMEYHQGNILANEGILMPLDEDLQYSLLYGNLNTVNYEVQNTDLSEFNDPGLIADVPIYFNDTLRFESWYPCNPANYSLIDESV* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02220 577 SUPERFAMILY CheY-like 16 144 IPR011006 -
Pte1g02220 577 SMART REC_2 17 129 IPR001789 GO:0000160
Pte1g02220 577 Gene3D - 198 261 - -
Pte1g02220 577 Pfam Myb-like DNA-binding domain 204 254 IPR001005 -
Pte1g02220 577 Gene3D - 17 191 - -
Pte1g02220 577 CDD REC_typeB_ARR-like 19 133 - -
Pte1g02220 577 Pfam Response regulator receiver domain 19 127 IPR001789 GO:0000160
Pte1g02220 577 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 361 IPR045279 GO:0009736
Pte1g02220 577 SUPERFAMILY Homeodomain-like 200 259 IPR009057 -
Pte1g02220 577 MobiDBLite consensus disorder prediction 268 287 - -
Pte1g02220 577 FunFam Two-component response regulator 198 261 - -
Pte1g02220 577 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Pte1g02220 577 NCBIfam myb-like DNA-binding domain, SHAQKYF class 202 255 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02220 Pte-Chr1 43124818 43128027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02220 11 260 Response Regulator Gene Family AT2G25180 52.672 1.45e-80 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pte1g02220 Response_reg 6e-25 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02220 K14491 - qsa:O6P43_023917 616.305