LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte1g02204	ATGTTAGGGGAAGAGGAAAGGGACCACCTTTCAGATGGTTCGAGGAGGACATATTTGAGGTCAGTTTCCTGGACTGATCGCTCTCCAAACAAGCCTAATGGCAACCACATACCTCAGGCCAAGAGTACCAAAGTCCGGTCTTGTTTACCACACCTTCAGCCGCTTGCAATCAACAGAAGATGTGCTGATGAGTGGCCAAAGGCAGGGTCTGATGACCTTGGAATTTGGCCTCATCCCCAAACTCCAAAAGTGTCTGTCAGAGCCGCTGTGAATTCTGGTTCCAATCAGCCCAAAGAAGAGTTTCAGTTCAAGAGGGAAAAGCTTGCTTTTTTTGACAAAGAGTGTTCCAGAATTGCCGATCATATTTATCTAGGGAGTGATGCAGTGGCGAAAAATCTTCAAGTTTTGAAGGAAAATGCCATTACTCATGTCTTGAACTGTGTTGGTTTTGTTTGTCCTGAGTATTTCAAGAATGATTTTGTGTACAAGACACTTTGGTTGCAAGACAGTCCATCCGAGGATATTACAAGTATCCTCTATGACGTTTTTGATTACTTTGAAGATGTGCGAGAGCAAGAGGGGCGTGTTCTAGTCCATTGTTGCCAGGGAATTTCTAGATCAACTTCCCTAGTCATTGCGTATCTCATGTGGAAGAAAGGCCAAAGCTTTGAAGAGGCATTTCAATATGTGAAAGCTGCCAGAGGAGTGACAAATCCAAATATGGGATTTGCTTGTCAACTTCTGCAGTGCCAGAAAAGGGTGCACGCCGTGCCTGCCAGTCCAAATTCTGTGCTTAGAATGTATAGAATGGCTCCGCACTCTCCATACGATCCTCTTCATTTGGTGGCCAAAATGATAAGCAATCCAGGAGCTGACAGGCTAGACTCTCGTGGAGCATTTCTTGTCCATGTTCCAAATGCAATCTATGTTTGGACGGGAAAGTTTTGCAACTCAGTGATGTCAAGTCATGCCAGGGCAACAGCCTTTCAGGTCGTTCACTATGAGAGCGCAAAAGGTCCAGTCGTAAGCATTGCAGAAAGCAAAGAACCAAGTAAATTTTGGGATGCCCTTTCACAGGAGCAACTGTCGGCTGAAGGTTCTGAGAATATGCTGAAGAACGACCACTACTTGCCATATGAGAATTCCAAAATTCCTACTGAAGTTTATGGTGAAATCGGCACCAGGAAAGTTGCCGAATACGATTTGGATTTTGAAATTTTCGACAAAGCCCTCTCTGGAGGGGTTGTTCCACCATTTACTGTATCAGACGGAAGATCAGAAACCTGCCTCCCTGCTAGAGAAAGCGGGTGGAGCAGACTCAGGAGAAAATTTGCCAATGGTATTATGAAAGAATTTTTGACTTTCTCCAAACTGAAATCTGATCCTGCACATTTCTATTTAGATGATGATAGTTCTCATCCCCCACCAACTAATTGTGGTTCACCTGGTTCCTTTCCTTATTTTCTTCGGAGTAGCTCAAACCTAAGCTCTAGTTCCCCAACGCTGTCACCCTCAACTTCTGATTACTCCAGCTCTCTCACGTTTTCACCCTCTTCATCCCACTGGTCTGACTTGTCGTACCTGTCTTCCCAGCAGCCTTCACCTTCCGGCTTGAGTTCAATAGAACCTTGTCTTAATGGAAGTACTTCAATCTCCGGAGATGCCTTTATATTCCATCAAGACACTCCCGCTTCATGCCCACACTCAGATACCAGTTTCAACTTTGGAGAGGCAAATGCATGTTTGGCATTTAAAGAGTTATCCTCTCCAATTGCAGAACGCAGCAAAAGCAATGCTCCTCCTAAGATGGTTTTACCCTCAACTGATGAATCATCGTATGTTCTCAAGAGTCTAAATAGGTCATGGTCATTCTCATTAAATGACTCGGATGAGGACCTGATGGAGATTGTTGACAAGAAATCGGAGAGTGTAAGCAGTAGAGAGGTGTTGAAGTTAGATGCTGATATGGCCTGTGTATCTGAATTCGAGGTGGATCCCGCTACTATTGATCTGTATGAATACTTCAATATAACATCCAAAGACTGTGGATAG	2052	0.4425	MLGEEERDHLSDGSRRTYLRSVSWTDRSPNKPNGNHIPQAKSTKVRSCLPHLQPLAINRRCADEWPKAGSDDLGIWPHPQTPKVSVRAAVNSGSNQPKEEFQFKREKLAFFDKECSRIADHIYLGSDAVAKNLQVLKENAITHVLNCVGFVCPEYFKNDFVYKTLWLQDSPSEDITSILYDVFDYFEDVREQEGRVLVHCCQGISRSTSLVIAYLMWKKGQSFEEAFQYVKAARGVTNPNMGFACQLLQCQKRVHAVPASPNSVLRMYRMAPHSPYDPLHLVAKMISNPGADRLDSRGAFLVHVPNAIYVWTGKFCNSVMSSHARATAFQVVHYESAKGPVVSIAESKEPSKFWDALSQEQLSAEGSENMLKNDHYLPYENSKIPTEVYGEIGTRKVAEYDLDFEIFDKALSGGVVPPFTVSDGRSETCLPARESGWSRLRRKFANGIMKEFLTFSKLKSDPAHFYLDDDSSHPPPTNCGSPGSFPYFLRSSSNLSSSSPTLSPSTSDYSSSLTFSPSSSHWSDLSYLSSQQPSPSGLSSIEPCLNGSTSISGDAFIFHQDTPASCPHSDTSFNFGEANACLAFKELSSPIAERSKSNAPPKMVLPSTDESSYVLKSLNRSWSFSLNDSDEDLMEIVDKKSESVSSREVLKLDADMACVSEFEVDPATIDLYEYFNITSKDCG*	684

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte1g02204	683	SMART	dsp_5	114	253	IPR020422	GO:0006470\|GO:0008138
	Pte1g02204	683	MobiDBLite	consensus disorder prediction	1	42	-	-
	Pte1g02204	683	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	109	255	IPR029021	-
	Pte1g02204	683	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	114	256	IPR020422	GO:0006470\|GO:0008138
	Pte1g02204	683	MobiDBLite	consensus disorder prediction	1	15	-	-
	Pte1g02204	683	Gene3D	Severin	266	364	IPR029006	-
	Pte1g02204	683	PANTHER	MKPA PROTEIN	9	639	-	-
	Pte1g02204	683	Gene3D	Protein tyrosine phosphatase superfamily	87	256	IPR029021	-
	Pte1g02204	683	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	183	234	IPR000387	GO:0016311\|GO:0016791
	Pte1g02204	683	CDD	DSP	115	249	-	-
	Pte1g02204	683	ProSitePatterns	Tyrosine specific protein phosphatases active site.	198	208	IPR016130	GO:0016311\|GO:0016791
	Pte1g02204	683	Pfam	Dual specificity phosphatase, catalytic domain	122	252	IPR000340	GO:0008138\|GO:0016311
	Pte1g02204	683	SUPERFAMILY	Actin depolymerizing proteins	260	364	-	-
	Pte1g02204	683	MobiDBLite	consensus disorder prediction	16	42	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte1g02204	Pte-Chr1	43033331	43037546	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte1g02204	1	150	Protein tyrosine phosphatase (PTP) family	AT3G55270	46.486	3.13e-36	144

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte1g02204	-		-	qsa:O6P43_023149	762.296