Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02195 ATGGGTCTCTCACACTTTCCTTCTGCATCTGAAGGAGTACTCCTTGTACTTGTGATGAACACAGTTCTGTCAGTATCTCTGTTAAAGAACATGGTAAGATCTATGCTTTCAGCGATGGGCTCCACGGAAAGTGCGTCCAATGTAGATCAGGAAGATTTAGATAATTACACTGAGGATTTTTCAAGAGAGAGGAGAATCTCCATAACTCAATTCAAATCCTTGTGCAACACCAGGAGTGCTGCAGAGGCCATAAGCGACAGTAGTAGAAGTACAACTACTGCTGGTACCGGTGGCTGGGTTAATACAGTGGAGTGTTGCGTGTGTCTTTGTCTGTTTGAAGCGGATGAGGAGGTGAGTGAATTATCATGCAAGCATTTCTTCCACAAAGGTTGCCTAGAGAAGTGGTTCCAGAAAAAGCACAGCACCTGTCCTCTCTGCCGCTCGATTGAGTAG 453 0.4525 MGLSHFPSASEGVLLVLVMNTVLSVSLLKNMVRSMLSAMGSTESASNVDQEDLDNYTEDFSRERRISITQFKSLCNTRSAAEAISDSSRSTTTAGTGGWVNTVECCVCLCLFEADEEVSELSCKHFFHKGCLEKWFQKKHSTCPLCRSIE* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02195 150 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 149 IPR013083 -
Pte1g02195 150 Pfam Ring finger domain 104 147 IPR001841 -
Pte1g02195 150 CDD RING-H2_PA-TM-RING 104 147 - -
Pte1g02195 150 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Pte1g02195 150 SMART ring_2 105 146 IPR001841 -
Pte1g02195 150 SMART ringv_2 104 147 IPR011016 GO:0008270
Pte1g02195 150 SUPERFAMILY RING/U-box 104 148 - -
Pte1g02195 150 PANTHER - 1 148 IPR044249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02195 Pte-Chr1 42980200 42984476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02195 1 148 C3H Transcription Factor Family AT2G04240 33.929 4.60e-24 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02195 K16285 - tcc:18609579 199.134