Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02190 ATGTTTCCTTTTAATGAAATTCTGTTTCGATTCCATGGTCTTAATCAACCCCCCTGTTCTCTTGTTATCATTTTCTCTTCAGACGAACGTAACCCTAGAAACAACCACATGTATAGCAGAGATCAGTTCCGAGATCAGTTCCAATCCATATTGGACGGCCTAGATGAAGAAGGCAGTGTTGAAGAGGCCGGCCATATTGGGGAAAAGAAACGGAGACTGAGCGTCACCCAAGTCAAGGCTTTGGAGAAGAACTTCGAGCTTGAAAATAAGCTTGAACCTGAGAGAAAAGTAAAGCTTGCTCAAGAATTAGGCTTGCAACCAAGACAAGTGGCAGTCTGGTTCCAAAACCGCCGAGCTAGATGGAAAACCAAGCAATTAGAAAGGGATTATGGTGTCCTCAAAGCCAACTATGAAGCCCTCAAACTCAACTTTGATACTCTCCAACATGACAACGATACTCTGCGAAAAGAGGTAAGAGAATTGAAATCAAAGTTTGAAGAAGAGAACAATACGGAGAGTGACATCTCAGTGAAGGGAGAGGTCACCATTCAAGACTCTGAAAACAAAGTTGTTGAACAGAGCAACCCTACTTCGGAAAACCCCATTCATAAATCAGAACCCAAGGATATGAGCCATGGGTGCTTCAATGGCTGCAGTGGGGCGGGAGGGAGCTCACTCTTTGCAGTTGACATCAAAGACGGAGCTTCAGATAGTGACTCAAGTGCTATCTTAAACGAAGATAATAGTCCAAAAGCTACCATATCTTCATCTGGGGTTCTTAAAAGTCACCAACTTCCGATATCTCCATCACCGCCTTCCTCCAGCAACTGCTTTCAGTTCCATAAAGTATACCAATCTCAATTTGTGAAAACGGAAGAGCACAATTTCTTTGGCGGAGACGACACCTGCGATTTCTTCTCGGAGGAACAAGCTCCTACCCTTCATTGGTACTGCTCGGATCAGTGGAATTGTAATTAA 978 0.4376 MFPFNEILFRFHGLNQPPCSLVIIFSSDERNPRNNHMYSRDQFRDQFQSILDGLDEEGSVEEAGHIGEKKRRLSVTQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYEALKLNFDTLQHDNDTLRKEVRELKSKFEEENNTESDISVKGEVTIQDSENKVVEQSNPTSENPIHKSEPKDMSHGCFNGCSGAGGSSLFAVDIKDGASDSDSSAILNEDNSPKATISSSGVLKSHQLPISPSPPSSSNCFQFHKVYQSQFVKTEEHNFFGGDDTCDFFSEEQAPTLHWYCSDQWNCN* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02190 325 ProSiteProfiles 'Homeobox' domain profile. 64 124 IPR001356 GO:0003677
Pte1g02190 325 Gene3D - 65 131 - -
Pte1g02190 325 MobiDBLite consensus disorder prediction 238 257 - -
Pte1g02190 325 ProSitePatterns 'Homeobox' domain signature. 99 122 IPR017970 GO:0000981|GO:0006355
Pte1g02190 325 Pfam Homeobox associated leucine zipper 124 164 IPR003106 GO:0006355|GO:0043565
Pte1g02190 325 Pfam Homeodomain 69 122 IPR001356 GO:0003677
Pte1g02190 325 FunFam homeobox-leucine zipper protein ATHB-6-like 72 118 - -
Pte1g02190 325 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 49 284 IPR045224 GO:0003700
Pte1g02190 325 MobiDBLite consensus disorder prediction 186 201 - -
Pte1g02190 325 SUPERFAMILY Homeodomain-like 60 126 IPR009057 -
Pte1g02190 325 CDD homeodomain 69 125 IPR001356 GO:0003677
Pte1g02190 325 SMART HOX_1 67 128 IPR001356 GO:0003677
Pte1g02190 325 PRINTS Lambda-repressor HTH signature 95 104 IPR000047 GO:0003677
Pte1g02190 325 PRINTS Lambda-repressor HTH signature 104 120 IPR000047 GO:0003677
Pte1g02190 325 Coils Coil 123 171 - -
Pte1g02190 325 MobiDBLite consensus disorder prediction 237 257 - -
Pte1g02190 325 MobiDBLite consensus disorder prediction 186 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02190 Pte-Chr1 42950970 42953729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02190 19 322 Homeobox Transcription Factor Family AT4G40060 44.377 3.81e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pte1g02190 Homeodomain 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02190 K09338 - qsa:O6P43_030496 399.438