Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02184 ATGGAGGAAGAAGAACATGAGGTTTATGGTGGAGAAATCCCAGATGTCGAGGGAGATATCGACTCTCACCATGTAGACGTCGATATGTCAGCGGCTGACGAGGACGCCGTCAAGGAATTGGATGAGATGAAGAAACGGCTGAAGGAAATGGAAGAGGAAGCAGCTGCTCTCCGTGAAATGCAGGCGAAGGTCGAGAAGGAGATGGGTGCAGTCCAAGACCCAGCTGCTGCAGCTGCTTCTCAAGCAAACAGGGAGGAGGTGGATTCTCGTTCAGTTTTTGTTGGCAATGTTGATTATGCTTGCACGCCTGAAGAAGTGCAGCAACACTTCCAATCATGTGGCACCGTAAATCGGGTTACTATCCTTACAGACAAGTTTGGCCAGCCGAAGGGTTTTGCATTTGTGGAATTTCTTGAACCTGAAGCTGTTCAAGAGGCCCTTGTCCTAAATGAATCTGAATTGCATGGCCGTCAATTGAAGGTAACGCCCAAGAGAACTAACGTTCCAGGGATGAAGCAGTACCGTCCCAGGCGTTTCAATCCTTACATGGGTTTCCGCATGAGGAGGCCCTATCCACCTCCTTACTTTTACTCTCCTTATGGTTATGGATTGATGTATCTTGTTCAGCACTTGACATCGTCATTTAAATTCTACGCAGCAAGGTTCCCAGATTCAGGAGGCCCGCAAGATACATGCCTTACTTTTAGAGTACAACATTCTTGTTCGGACTTGGGAGTCCCATCACAGTACCGTTGA 756 0.4802 MEEEEHEVYGGEIPDVEGDIDSHHVDVDMSAADEDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAAAAASQANREEVDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAFVEFLEPEAVQEALVLNESELHGRQLKVTPKRTNVPGMKQYRPRRFNPYMGFRMRRPYPPPYFYSPYGYGLMYLVQHLTSSFKFYAARFPDSGGPQDTCLTFRVQHSCSDLGVPSQYR* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02184 251 FunFam Polyadenylate-binding protein 1 29 162 - -
Pte1g02184 251 MobiDBLite consensus disorder prediction 1 20 - -
Pte1g02184 251 Gene3D - 19 173 IPR012677 -
Pte1g02184 251 SMART rrm1_1 91 162 IPR000504 GO:0003723
Pte1g02184 251 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 166 IPR000504 GO:0003723
Pte1g02184 251 CDD RRM_II_PABPs 91 162 - -
Pte1g02184 251 Coils Coil 33 67 - -
Pte1g02184 251 SUPERFAMILY RNA-binding domain, RBD 81 188 IPR035979 GO:0003676
Pte1g02184 251 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 160 IPR000504 GO:0003723
Pte1g02184 251 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 30 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02184 Pte-Chr1 42920791 42924918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02184 91 187 Eukaryotic Initiation Factors Gene Family AT2G36660 30.928 1.98e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02184 K14396 - rcu:8273530 318.931