Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02172 ATGACACAGCTGGACGTCTTAGTTTCTGACACCAGTTCTGCAATCAACATGCCCACTGCTGTTTCCGTATCAAGAACGTCTATTGTCATTCCCTCGGCGCAGAATCCTTCGGCTGCTCCTTCAAGTGGATCCATTTCTAAATCCAGAAATGAGTTACTTAAGAACATAGAGATCAATGGAGGAGCGAGAATAAGTTCCTGGGTGGATTCAATGAGAGCATCTTCACCAACCCGTATAAAATCCACAGAGTCTTTTATCGAAGAGCGGAGTTCCTGGTTTGCTGAGCATCCGTCAGCACTGGAAATGTTTCAACAAATCAAGGACGCATCAAAGGGAAAGCAGATAGTGATGTTTCTCGACTATGACGGGACGCTGTCACCTATCGTCGATGATCCAGATCGTGCATTCATGTCTTCTGCGATGAGAAAAACAGTGAGAAAGCTAGCAAGGTGCTTCCCTACTGCAATAGTGACCGGAAGATGCAGGGACAAGGTGTATAGTTTTGTACGTTTGGCAGAGCTTTACTATGCTGGAAGTCATGGAATGGACATCCAGGGACCAACAAAGGGTTTCGATTACAAGAAAAACCATCAGTCGCTTCTCTTTCAAACTGCAAGCGAATATCTACCTATGATCGACGAGGTCTACAAACTATTGACTGAAAAAACAAAATCAACTTTTGGAGCAAAGGTTGAGAATAACAGATTTTGCGTTTCGGTTCACTTCCGACGCGTTGATGAAAAGAAATGGAGCAAACTAGCTCAGCAAGTGAGATCTGTGGTAAAGGATTATCCAAAGCTTCGACTTAGTCAAGGAAGAAAGGTATTGGAGATACGTCCCACCGTTACATGGGACAAAGGCAAAGCCCTTGAGTTTTTGCTACAATCCCTTGGTTTCGCCAACAAGGATGTTTTCCCCTTGTATATTGGAGATGACCGAACTGACGAAGATGCATTTAAGATAATACGAGACAGAGGACAAGGTGTTGGCATCCTTGTTTCAAAATGTCCAAAAGATACCAAAGCATCTTATTCTTTGCAAGAACCAAACGAGGTAATGGACTTCCTGCGACGCTTGGTAGAGTGGAAACAGCCATCTTCACGAGCACAGTATCGTAGCTAG 1122 0.4403 MTQLDVLVSDTSSAINMPTAVSVSRTSIVIPSAQNPSAAPSSGSISKSRNELLKNIEINGGARISSWVDSMRASSPTRIKSTESFIEERSSWFAEHPSALEMFQQIKDASKGKQIVMFLDYDGTLSPIVDDPDRAFMSSAMRKTVRKLARCFPTAIVTGRCRDKVYSFVRLAELYYAGSHGMDIQGPTKGFDYKKNHQSLLFQTASEYLPMIDEVYKLLTEKTKSTFGAKVENNRFCVSVHFRRVDEKKWSKLAQQVRSVVKDYPKLRLSQGRKVLEIRPTVTWDKGKALEFLLQSLGFANKDVFPLYIGDDRTDEDAFKIIRDRGQGVGILVSKCPKDTKASYSLQEPNEVMDFLRRLVEWKQPSSRAQYRS* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02172 373 Gene3D - 213 372 IPR023214 -
Pte1g02172 373 Gene3D - 115 199 IPR023214 -
Pte1g02172 373 NCBIfam trehalose-phosphatase 113 360 IPR003337 GO:0003824|GO:0005992
Pte1g02172 373 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 33 370 IPR044651 GO:0004805|GO:0005992
Pte1g02172 373 FunFam Trehalose 6-phosphate phosphatase 115 201 - -
Pte1g02172 373 NCBIfam HAD-IIB family hydrolase 117 325 IPR006379 -
Pte1g02172 373 FunFam Trehalose 6-phosphate phosphatase 211 369 - -
Pte1g02172 373 CDD HAD_TPP 116 353 - -
Pte1g02172 373 SUPERFAMILY HAD-like 116 362 IPR036412 -
Pte1g02172 373 Pfam Trehalose-phosphatase 118 349 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02172 Pte-Chr1 42747010 42813154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02172 106 367 Trehalose Biosynthesis Gene Families AT1G06410 27.338 6.81e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02172 K01087 - qsa:O6P43_023219 548.51