Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02162 ATGGACTTGGCTCCCAAGCTTCACCGTCTGGACCTTGGCTCGAACTTTCTCTCTGGTACAGTCTTCTTGGATACAAGGCAAGCCGCTATACGACCGTTTCTACGATCATCTGTGGCTACTCAGGGCAATATTGGTTACACCGGTTCTATCAGAACCAGTTTACGTTTTAATCCCAGAAAAGCAAATTACACGATTTCAGCACAGTCATCAGCTGCCTCTGTACAAACTTCGGCGTCAGAAGCTTCGACTGAAGAGGACATAGAATCTTTGTTTTCAGATACGAGTGTCGATGAGTTTGAGCGGAAACGTGCGAGCAAGCAAGTAAATACGGGTGCTTCTGGGATTTCCTCTGGTGTTAAGTTAGAGAATATAATGAAAGTTTATAAGGGTGTCACTGTATTGAAAGACGTGAGTTGGGAAGTTAAGAAAGGAGAGAAAGTGGGGTTGGTGGGTGTGAATGGTGCTGGCAAGACCACCCAGTTGAGAATTATTTCGGGTCAGGAAGAACCTGATGGGGGCAACGTGATAAAATCAAAACCAAATATGAAAATTGCATTTTTGAGTCAGGAATTTGAGGTGTCAATGAGTCGGACAGTGAGGGAGGAGTTTATGAGTGCATTTAAGGAGGAAATGGAAGTAGCATCCAAGTTGGAGAGAGTGCAGAAGGCATTAGAGTGTGCTGTAAATGATTTAGACCTCATGGGAAGGCTTTTAGATGAGTTTGATTCGCTCCAGAGGAAAGCACAAGCAGTTGATTTGGATCAAGTGGATGCTAAAATTAGTAAATTGATGCCTGAACTTGGGTTTACTTCTGAGGATTCTGACAGATTGGTAGCTTCTTTTAGCAGTGGGTGGCAGATGAGAATGTCCCTTGGAAAGATATTACTTCAGGAGCCAGATCTGTTACTGTTGGATGAACCCACAAATCACCTTGACCTTGACACTATTGAGTGGCTTGAAGGTTATCTCAAAAAGCAGGATGTGCCTATGGTTATAATCTCGCATGACAGAGCTTTTCTTGATCAGCTATGTACGAAAATTGTGGAGACTGACATGGGTGTTTCCCGAACGTTTGATGGAAATTATTCCCAGTATATTGTTTCCAAAGCAGCATGGATTGAAGCACAGCATGCTGCTTGGGAGAAGCAGCAAAAAGAAATTGAGCAAACCAAAGACTTGATTAACAGATTAGGTGCTGGAGCAAATTCTGGTCGTGCTTCTACTGCTGAGAAGAAGCTGGAAAAACTTCAGGACAAGGAGCTAATAGAGAAGCCATTTCAACGCAAACAAATGAAAATCAGGTTCCCGGAGCGAGGAAGAAGTGGAAGAACTGCCGTGACAATTAAGAATTTGGAATTCGGCTTTGAGGATAAGGTTCTTTTTAAAGGGGCAAATCTTACCATTGAAAGGGGTGAGAAAATTGCCATTCTTGGTCCAAATGGATGTGGGAAGAGTACCTTGCTTAAACTTATAATGGGCTTGATAAAACCAAGAAGAGGTGAAATTCTACTTGGGGAGCATAATGTATTACCAAACTATTTTGAGCAAAATCAGGCTGAAGCACTTGATCTTGATAAGACAGTACTTGAAACGGTTGAAGAAGTTGCAGAGGATTGGAGAATTGATGATATAAAGGGTCTTCTTGGACGATGTAATTTTAAATCAGAAATGCTTGACAGAAAGGTCTCCTTTTTAAGTGGTGGTGAGAAGGCACGTTTGGCTTTCTGCAAATTCATGGTGAAACCTTCGACTCTGCTAGTGCTGGACGAACCGACTAACCACTTGGATATACCTTCAAAGGAAATGCTTGAGGAGGCGATATCAGAGTATCAGGGCACTGTGATTACAGTCTCTCATGACAGATATTTTATAAAGCAAATTGTTAACAGAGTCATTGAAGTTAAAGACTGCAATCTACAGGATTACTCTGGAGACTACAATTATTATCTGGAAAAAAATCTTGATGCACGGCAAAGAGAGCTGGAGCGTGAGGCTGCACTTGAGGAAAAAGCCCCCAAATTGAAAGCAAAATCCAAGATGTCAAAGGCTGAGAAAGAAGCTAGGAAGAAACAGAAAATGCAGGCATTTCATGCTGCCAAACAAAAGTCTAAAGGGACCAAAAATGCCAAGAGATGGAACTGA 2142 0.4211 MDLAPKLHRLDLGSNFLSGTVFLDTRQAAIRPFLRSSVATQGNIGYTGSIRTSLRFNPRKANYTISAQSSAASVQTSASEASTEEDIESLFSDTSVDEFERKRASKQVNTGASGISSGVKLENIMKVYKGVTVLKDVSWEVKKGEKVGLVGVNGAGKTTQLRIISGQEEPDGGNVIKSKPNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEVASKLERVQKALECAVNDLDLMGRLLDEFDSLQRKAQAVDLDQVDAKISKLMPELGFTSEDSDRLVASFSSGWQMRMSLGKILLQEPDLLLLDEPTNHLDLDTIEWLEGYLKKQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTFDGNYSQYIVSKAAWIEAQHAAWEKQQKEIEQTKDLINRLGAGANSGRASTAEKKLEKLQDKELIEKPFQRKQMKIRFPERGRSGRTAVTIKNLEFGFEDKVLFKGANLTIERGEKIAILGPNGCGKSTLLKLIMGLIKPRRGEILLGEHNVLPNYFEQNQAEALDLDKTVLETVEEVAEDWRIDDIKGLLGRCNFKSEMLDRKVSFLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYQGTVITVSHDRYFIKQIVNRVIEVKDCNLQDYSGDYNYYLEKNLDARQRELEREAALEEKAPKLKAKSKMSKAEKEARKKQKMQAFHAAKQKSKGTKNAKRWN* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02162 713 CDD ABCF_EF-3 446 636 - -
Pte1g02162 713 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 119 377 IPR003439 GO:0005524
Pte1g02162 713 Pfam ABC transporter 348 435 IPR032781 -
Pte1g02162 713 Gene3D - 408 674 IPR027417 -
Pte1g02162 713 FunFam ABC transporter ATP-binding protein 406 675 - -
Pte1g02162 713 Gene3D - 115 401 IPR027417 -
Pte1g02162 713 Coils Coil 673 693 - -
Pte1g02162 713 ProSitePatterns ABC transporters family signature. 565 579 IPR017871 GO:0005524|GO:0016887
Pte1g02162 713 PANTHER ABC TRANSPORTER ATP-BINDING SUBUNIT 118 705 - -
Pte1g02162 713 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 446 661 IPR003439 GO:0005524
Pte1g02162 713 Pfam ABC transporter 462 593 IPR003439 GO:0005524
Pte1g02162 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 120 353 IPR027417 -
Pte1g02162 713 SMART AAA_5 470 638 IPR003593 GO:0016887
Pte1g02162 713 SMART AAA_5 143 358 IPR003593 GO:0016887
Pte1g02162 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 426 652 IPR027417 -
Pte1g02162 713 MobiDBLite consensus disorder prediction 667 713 - -
Pte1g02162 713 Pfam ABC transporter 134 309 IPR003439 GO:0005524
Pte1g02162 713 CDD ABCF_EF-3 119 349 - -
Pte1g02162 713 MobiDBLite consensus disorder prediction 667 693 - -
Pte1g02162 713 Coils Coil 651 671 - -
Pte1g02162 713 FunFam Putative ABC transporter ATP-binding component 117 404 - -
Pte1g02162 713 ProSitePatterns ABC transporters family signature. 281 295 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02162 Pte-Chr1 42685397 42689622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02162 443 663 Calmodulin-binding Proteins AT2G36910 25.203 3.07e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02162 - - qsa:O6P43_030405 1088.17