Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte1g02114 | ATGTCTAATACTGCATCAACCATTAAGCTCTTTCAAGATGTTATTCAAGAGTTCCACTCTAGAAAACTGCTTATTCAGAATCCTGCAAACCATTCACCCAGTTCAGCAAACCCTCCTGCTTCAACTCATGATTCGGTTGACTATACAGGAGACAACAATTTTGATACAAATGTCGTTATGGTACTTTCAGTTCTCTTTTGTGCTCTTATATGTTCTCTGGGGTTGAACTCCATCATCAGGTGTGCATTAAGGTGCTCAAGATTCACATCAAATGATGAATATGTGAACAACCCTCCAGCTCGATTAGCCAACACTGGAATCAAACGTAAAGCTCTTAGAACTTTCACCATAGTAAATTACTCAACAGAGTTAAAGCTCCCAGGCTTGGACACAGAGTGTGCAATTTGCCTGACTGATTTTACTACTGGTGAGCGTTTGCGCCTCTTGCCAAAGTGCAACCATGGATTTCATATCCGGTGCATCGACAAGTGGCTGAGTTCACACTCGTCTTGCCCCAAATGTAGAGAGTGTCTAATTGAGACATGCCAGAAGATAGTTGGCTGCAGCAGCCAAGTTAGCTCATTACCCCCACCAGCACCACTGGCACCAGAGACAATGGTAAGAATTGCTCCTTTAGAACCTGAAGCTTTGATTCGTAACTACAGGCGCCAAAGCTGCTAG | 681 | 0.4347 | MSNTASTIKLFQDVIQEFHSRKLLIQNPANHSPSSANPPASTHDSVDYTGDNNFDTNVVMVLSVLFCALICSLGLNSIIRCALRCSRFTSNDEYVNNPPARLANTGIKRKALRTFTIVNYSTELKLPGLDTECAICLTDFTTGERLRLLPKCNHGFHIRCIDKWLSSHSSCPKCRECLIETCQKIVGCSSQVSSLPPPAPLAPETMVRIAPLEPEALIRNYRRQSC* | 227 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte1g02114 | 226 | CDD | RING-H2_EL5-like | 132 | 175 | - | - | |
Pte1g02114 | 226 | SMART | ring_2 | 133 | 174 | IPR001841 | - | |
Pte1g02114 | 226 | SUPERFAMILY | RING/U-box | 117 | 180 | - | - | |
Pte1g02114 | 226 | FunFam | RING-H2 finger protein ATL73 | 96 | 180 | - | - | |
Pte1g02114 | 226 | Pfam | Ring finger domain | 132 | 175 | IPR001841 | - | |
Pte1g02114 | 226 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 89 | 179 | IPR013083 | - | |
Pte1g02114 | 226 | ProSiteProfiles | Zinc finger RING-type profile. | 133 | 175 | IPR001841 | - | |
Pte1g02114 | 226 | PANTHER | RING-H2 FINGER PROTEIN ATL78 | 12 | 217 | IPR044602 | GO:0016567|GO:0016740 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte1g02114 | Pte-Chr1 | 42337769 | 42338449 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte1g02114 | 24 | 179 | C3H Transcription Factor Family | AT3G10910 | 47.239 | 6.35e-44 | 144 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte1g02114 | K19040 | - | qsa:O6P43_030363 | 307.375 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pte1g02114 | 1 | 42337769 | 42338449 | Pte1g02114 | 1 | 42337769 | 42338449 | RCT |