Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02113 ATGGTCAAAGAAGACCTTTACATCTCGATTCCCAGCTTCTTCAAGTGTCCTATATCGCTTGACGTGATGAAGTCTCCTGTCAGTCTTAGCACCGGCGTCACCTACGACCGTTCTAGCATTCAACGGTGGCTGGAGAACGGCAACAACACCTGTCCCGCCACCATGCAGGTGCTTCAAAGTAAAGACTTTGTACCAAATCATAATTTACAGCGTCTTATTCAAATCTGGTCGGACTCCGTCTGTCAGCGAGTCCACTCAGCCGAATCGCCTGGTAATGACTCGGTTCCCTCACGGGAACAAGTCGTGGAGATGGTCAGAGCCATGGATAGTCAGACACCCAACAGCATAGATTCGCTCATTAAGATTCTTAGCTTTGCGGAGGAAACGGAAGAGAACCGGAAGTTCCTTGCCAAAAACGATGGCTTTGTACTGAAGCTGGTAGATTTTCTCGACAATGCGGATGGTGACGCAGCGGTTACAGTTCCATTACTGGAGCGGGTCGTTCGGGTTTTAAATTGGGCAATGATAAAAAATGACGATCTCAAGGAATGGAAGAATTCCATGCTGAAGAACCACCGCCACTGTTTAGCTTCTTTGCTTCTGGTTCTACAACAAGGCAATTCCGATTCCAGAATCTGTACCGCTAGGGTTTTGGAATCCATCGCCATCGACGCCGAATCAAAGTTATTCATAGCCGAAAAGGATGGCCTGATACCCGAATTGCTGACGCTAATCAAGGCAGACAATGATCAAGCTTTAATCGAAGCCAGCTTGTCTTGCTTAATCTCAATCTCAAAGCCAAAACGAACCAAGGTCAGACTAGTCCATCTCGGAGCTATCAAAGAACTCTCTCAATTAGTCTCCGAATCAAACCCGAACCCCACCGTATCCATAACAGAGAAGGTGTTCAAGCTGCTGGAAATGCTGTCGTCTTGTAAGGAAGGGCGGATACAGATATCCGAAGACCAAGTATGCATACCGGCGATATTACAAAAAGTGTTGAAAGTATCGGGTGTGGTGACGGAGCACGCTGTGACGATACTGTGGAGCTTGTGCTATCTTTTCAGAGACAGAAGGGCTCAGGAATCTGTGACTAAAGCAAATGGTTTGACTAAAATTCTGCTATTGATGCAGAGTAATTGCTCGCCTGCGGTTCGGAAAATGTCGACCGATTTGCTAAAGGTTTTTCGAGTGAGCACCAAGTCCTGTCTTTCAGTTTATGACACCAAAACGACTCATATCATGCCCTTTTGA 1254 0.4657 MVKEDLYISIPSFFKCPISLDVMKSPVSLSTGVTYDRSSIQRWLENGNNTCPATMQVLQSKDFVPNHNLQRLIQIWSDSVCQRVHSAESPGNDSVPSREQVVEMVRAMDSQTPNSIDSLIKILSFAEETEENRKFLAKNDGFVLKLVDFLDNADGDAAVTVPLLERVVRVLNWAMIKNDDLKEWKNSMLKNHRHCLASLLLVLQQGNSDSRICTARVLESIAIDAESKLFIAEKDGLIPELLTLIKADNDQALIEASLSCLISISKPKRTKVRLVHLGAIKELSQLVSESNPNPTVSITEKVFKLLEMLSSCKEGRIQISEDQVCIPAILQKVLKVSGVVTEHAVTILWSLCYLFRDRRAQESVTKANGLTKILLLMQSNCSPAVRKMSTDLLKVFRVSTKSCLSVYDTKTTHIMPF* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02113 417 Pfam U-box domain 10 77 IPR003613 GO:0004842|GO:0016567
Pte1g02113 417 PANTHER WDSAM1 PROTEIN 9 405 IPR045185 GO:0061630
Pte1g02113 417 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Pte1g02113 417 SUPERFAMILY RING/U-box 5 77 - -
Pte1g02113 417 SUPERFAMILY ARM repeat 194 406 IPR016024 -
Pte1g02113 417 Gene3D - 89 406 IPR011989 -
Pte1g02113 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 88 IPR013083 -
Pte1g02113 417 CDD RING-Ubox_PUB 11 63 IPR045210 -
Pte1g02113 417 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Pte1g02113 417 FunFam RING-type E3 ubiquitin transferase 2 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02113 Pte-Chr1 42309060 42311576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02113 1 418 U-box Gene Family AT5G64660 52.471 4.57e-145 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02113 - - qsa:O6P43_023349 573.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g02113 1 42309060 42311576 Pte1g02113 1 42309060 42311576 RCT
Pte3g00055 3 708198 709582 Pte1g02113 1 42309060 42311576 RCT