Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02098 ATGGCGAGAACCAAATTGGTTCCAGGTTTTCGGTTCCACCCTACGGATATTGAGCTAGTGAAGTACTATCTAAAGAGGAAGGTCATGAGGAAGAAACTCTGCGTTGATGTTATTGCTGATGTTGACATATATAAGCACTCTCCTTGGGATCTTCCTGATAAGTCTGCTCTCCAAATTGGGGATCTTAAATGGTACTTCTTTTGCCCAGTCGGAAAGAAATATACGAGTGGGGCTAGAATGAATCGTGCAACTGAGTCTGGATATTGGAAGGCCACTGGGAAGGATAGGCCTGTTGTTCAAAATAATCAAGTTGTGGGGATGAAGAAGACACTTGTATTTCACATTGGTCGTTCTCCTCATGGAGAAAGAACTGACTGGGTTATGCATGAGTATAGGCTTGAAGAACATGATCTAGCTGACCAACAACTTGTGAAGGACCCCTATGTGTTGTGTGTTGTATACAAGAAAAATGGTCCGGGTCCACAAAATGGTGCTCAATATGGGGCACCATTTAACGAGGAAGATTGGGATGAAGAAGAGGAGAATGTTTGTGCTGAAACCATTCCCTTTACACCTTTGGGGGCACCAGTCTCTTCCATGTTGCCTATTGCCAAAAATGGTTCCCCTACGACTAGTGCCCATGTTACTGGGACTGCAGAGGTGGGTTTGTCATGTTTGTCGACTCTTTCTGGAGTTGAACCAGATCCTTGCAGCATGGTTCCTTCAGCTGGTGCTAATCCCAATCTCCCTGTTCCTTGTGATGATGATATTTTCTCTATGTTGGCTTGTTTCACTGAAGATACCACAGTGACTTTAGATGGAAGCGACAACCCTAAGAAGACTGATATCCTTCTTGCTAATGGAGGTGATGAAATTCAACCTTGTATCGACCCAAATGATATATACAATGGCTTAGGTGATCTGGAGGACATGGGTAGACTTTGCGGAAATATCTGTAACTTCTCAAGTGGTTACACTGTGGATCAAGTGCTTACTGGGCTTGAAAAACCCTTTCTGGAGTTGCACGATCTGGATTCTCCATTTCCTGTTTAA 1053 0.4378 MARTKLVPGFRFHPTDIELVKYYLKRKVMRKKLCVDVIADVDIYKHSPWDLPDKSALQIGDLKWYFFCPVGKKYTSGARMNRATESGYWKATGKDRPVVQNNQVVGMKKTLVFHIGRSPHGERTDWVMHEYRLEEHDLADQQLVKDPYVLCVVYKKNGPGPQNGAQYGAPFNEEDWDEEEENVCAETIPFTPLGAPVSSMLPIAKNGSPTTSAHVTGTAEVGLSCLSTLSGVEPDPCSMVPSAGANPNLPVPCDDDIFSMLACFTEDTTVTLDGSDNPKKTDILLANGGDEIQPCIDPNDIYNGLGDLEDMGRLCGNICNFSSGYTVDQVLTGLEKPFLELHDLDSPFPV* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02098 350 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 178 - -
Pte1g02098 350 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Pte1g02098 350 FunFam Nac domain-containing protein 86 15 159 - -
Pte1g02098 350 SUPERFAMILY NAC domain 3 156 IPR036093 GO:0003677|GO:0006355
Pte1g02098 350 Gene3D NAC domain 15 158 IPR036093 GO:0003677|GO:0006355
Pte1g02098 350 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02098 Pte-Chr1 42176513 42179891 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02098 1 348 NAC Transcription Factor Family AT5G09330 45.304 1.10e-95 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte1g02098 NAM 9.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02098 - - cit:102616225 350.132