Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02087 ATGAGAGAAAGTGGTGAGATGGCTATTCCTCACTTTTTCAGATGCCCCATCAGTCTGGAGTTACTCGAAGATCCAGTGACTCTATGTACAGGCCAAACATATGATAGGTCAAGCATTGAAAAATGGTTAGCTGCAGGTAACCTCACATGTCCTGTCACAATGCAGAAGCTTCATGATCCATCCATGGTTCCCAATCATACTCTACGTAATTTGATTGACCAATGGCTTCAATTGGGTCCCCAGTTTGAACCTTGCTATTCAGCAGAAATGGATTCTCTGGCCACTATGAAGCACAAGCTTGAATCCCATTCATCCAGCATAGATCGCAAGCTCAAATTAATTGAAAAGCTAAATCTTTTACTCGATAAACCTTACCCTCCCAGAGACTCTTGTTTTGTCCAGTTAGGCTTCTTATCTTTACTCTTGGAATTTGCGTTTGGCAGATTTGAAGCTGCAGAAATCTCCAAACACCATGTTCAGTTCATAGAACTCGCACTGTCTTGCATTGTGAAGTTGCTCCCTCTGAGCAATCTGCAAATTTTAAATACTCTCAAAGAAGAGTCTAAACTTGCATCATTCTGGCAATTGTTTGAACACGGCACTGTTGCAATGAAGATTAGTTTATGTCTACTCATGGATGCATTGTCATCGTCAGAAACAAAAGAGCTATGTGGTCTGCTTGGTAATTCACAGAGATTACTGCATGAGGTTGTTCTTCTTGTTCCTCAAAGTTCTGAGGCCTCAAAGGCAGGCGTAAAAGCTTTAGCTGCATTATGTTCTTCAGAAAGGAACAGAGAGAATTTTATAAAAGCAGGTGCGGTAGATGCAATCGTTACATGCATTGCAACTTCTGAAAGACTAGGAGAGAAAAACTTGACACTACCTTTGGCTATGACAGTGATCGAGAAGCTTCTGGAGCATGAAAGTGCAAAAGAGGCACTGGTATGTAACCCGAATGGTGTTCATGCTCTTGTGAAAATGGTATTCAGGGTGTCAGACCATGAATGGAGTGAGAGTGCCGTGGGGTCACTGTTACTTGTTTGTCATGATTCGTGTCGTGCGAGGGAGGAGGCTATTGGTGGGGGAGTGTTGACTCAATTACTGTTGCTTCTGCAGAGTCAATGCAGTGCCAGAACTAAAACAAAGGCAAGAATCCTTCTCAAAATGCTGAGATCCAAGTGGGGTGCGGACCAAAGGTAG 1200 0.4292 MRESGEMAIPHFFRCPISLELLEDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQKLHDPSMVPNHTLRNLIDQWLQLGPQFEPCYSAEMDSLATMKHKLESHSSSIDRKLKLIEKLNLLLDKPYPPRDSCFVQLGFLSLLLEFAFGRFEAAEISKHHVQFIELALSCIVKLLPLSNLQILNTLKEESKLASFWQLFEHGTVAMKISLCLLMDALSSSETKELCGLLGNSQRLLHEVVLLVPQSSEASKAGVKALAALCSSERNRENFIKAGAVDAIVTCIATSERLGEKNLTLPLAMTVIEKLLEHESAKEALVCNPNGVHALVKMVFRVSDHEWSESAVGSLLLVCHDSCRAREEAIGGGVLTQLLLLLQSQCSARTKTKARILLKMLRSKWGADQR* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02087 399 CDD RING-Ubox_PUB 10 57 IPR045210 -
Pte1g02087 399 SUPERFAMILY ARM repeat 244 390 IPR016024 -
Pte1g02087 399 FunFam RING-type E3 ubiquitin transferase 9 80 - -
Pte1g02087 399 Gene3D - 222 397 IPR011989 -
Pte1g02087 399 SUPERFAMILY RING/U-box 6 77 - -
Pte1g02087 399 PANTHER WDSAM1 PROTEIN 6 394 IPR045185 GO:0061630
Pte1g02087 399 Pfam U-box domain 9 77 IPR003613 GO:0004842|GO:0016567
Pte1g02087 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 79 IPR013083 -
Pte1g02087 399 ProSiteProfiles U-box domain profile. 8 82 IPR003613 GO:0004842|GO:0016567
Pte1g02087 399 SMART Ubox_2 12 75 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02087 Pte-Chr1 42099647 42100999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02087 7 394 U-box Gene Family AT3G19380 32.126 2.36e-46 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02087 - - cave:132166218 488.804