Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02073 ATGAACAGAAACGGCAACGGTCGAAAACGACCCCCACAGGCATCGCAGCCATCACCGGCGCAGCACTCCAAAGTCCAAGTATTTTCTCAAGAAGATGAGTTCGATGAGGACGTCTTCCTAGACCAAAATCTTATCACTGAAGAGGAAGAGTCCCTCATCCTCCGAGATATCGAGGAGCGTCAGGCCCTAGCCGACCGCCTTGCCAAGTGGACTCGTCCTCCGCTCTCCCCTGGGTTTCTTTCATTTTCTCAAAACATTCTATTTCAACAGCTGGAGATTGATTACGTGATCGGTGAGAGTCACAAGGCACTGCTGCCTAATTCATCTGGTCCTGCTGCAATTATTAGAATTTTCGGGGTTACGAAGGAAGGACATAGTGTCTGTTGCCACGTACATGGATTCGAACCATACTTCTACATCAGCTGCCCTCCAGGAATGGGTCCTGATGACATCTCTCGCTTCCATCAAATACTGGAGGGAAGGATGAGGGAAGCTAACAGAAATAGTAATGTACCCAAATTTGTACGTCGCGTAGAGCTCGTGCAGAGGAGGAGCATAATGTATTATCAACAGCAGAGTGCTCATCCCTTTCTTAAGATTGTAGTTGCACTGCCAACAATGGTGGCCAGCTGCCGTGGCATTCTTGACAGAGGAATACAAATCGATGGTCTTGGTATGAAGAGCTTTATGACTTATGAAAGCAATGTGCTTTTTGCCCTTCGTTTCATGATTGATTGCAACATCGTTGGTGGAAACTGGATTGAAGTGCCTGCTGGAAAATACAAGAGGAAGACAAAAAATATCTCCTATTGCCAACTGGAATTTGATTGCTTATATTCAGAATTGATTAGTCATGCTGCAGAAGGGGAGTTCTCCAAGATGGCACCATTTCGAATATTAAGCTTTGACATTGAGTGTGCTGGCCGTAAAGGTCATTTTCCTGAGCCAACGCATGATCCTGTGATCCAGATTGCCAATCTGGTGACTTTGCAAGGAGAAGGACAACCATGTATTCGCAATGTCATGACTCTTAAATCATGCTCTCCCATAGTTGGTGTTGATGTCATGTCATTTGATACAGAGAGAGAAGTATTGCTAGCTTGGAGGGATTTCATCCGTGAAGTTGACCCTGATATTATAATTGGATATAATATTTGCAAGTTTGACTTGCCATATCTCATTGAGAGGGCTGAGACCCTAAAAATAGCTGAATTTCCCATACTGGGACGTATCAGGAACAGCAGGGTTCGGGTTAAAGATACAACTTTTTCTTCAAGACAATATGGGACCAGAGAAAGCAAAGAGGTGACAGTGGAAGGAAGAGTTCAATTTGATTTACTTCAGGCTATGCAACGGGATTACAAGCTAAGTTCATATTCATTAAACTCTGTGTCTGCACACTTCCTTTCGGAGCAGAAAGAGGATGTTCACCACTCAATAATTTCCGATCTTCAGAATGGAAATGCAGAAACTAGAAGGCGGCTTGCTGTATATTGTTTAAAGGATGCATATCTCCCTCAAAGGCTTTTGGACAAGCTGATGTATATTTACAACTATGTTGAGATGGCTCGTGTAACAGGTGTTCCTATATCATTTCTTCTATCCAGAGGGCAAAGCATCAAGGTACTCTCTCAACTTCTTAGGAAGGCAAAACAGAAGAATCTTGTCATTCCTAATGTCAAACATGCAGGGTCTGAACAAGGAACATTTGAAGGTGCCACTGTTTTGGAAGCCAAGTCAGGATTCTATGAAAAGCCTATTGCTACTTTGGACTTTGCATCTTTATATCCATCAATTATGATGGCATACAATTTATGCTACTGTACTCTGGTGACAGCTGAAGATGTTCGGAAACTGAGCCTTCCTCCAGAATGTGTGAGCAAAACTCCATCTGGTGAAACATTTGTCAAAGCTACTTTGCAAAAGGGAATACTTCCTGAAATTCTCGAAGAACTTTTGGCTGCTCGTAAAAGAGCAAAAGCAGACTTAAAGGAAGCAAAAGATCCTCTAGAGAAAGCTGTCTTAGATGGTAGACAGCTGGCATTGAAGATAAGTGCGAATTCTGTATATGGATTCACGGGAGCCACAGTTGGTCAGTTGCCATGCCTCGAGATATCTTCAAGTGTCACAAGCTATGGTCGACAGATGATAGAGCACACAAAAAAGCTAGTAGAGGATAAGTTTACAACAACTGGTGGCTATAAACACAATGCCGAGGTAATATATGGGGATACAGATTCAGTCATGGTACAATTTGGCGTGCCTTCTGTTGAAGAGGCAATGACGTTTGGGAGAGAAGCTGCTGAATATATCAGTGGAACATTTACCAAGCCCATCAAACTGGAATTTGAGAAGGTTTATTATCCATATCTTCTAATTAGCAAGAAGAGATATGCTGGTCTACTGTGGACAAAATCAGAAAATTTTGATAAAATGGACACCAAAGGAATTGAAACAGTTCGTAGAGACAATTGTTTATTGGTAAAAAATTTGGTAAATGAGTGCCTTCACAAAATACTTATTGACAGAGACATTCCTGGGGCAGTCCAATATGTCAAAAATACAATATCTGATCTCCTTATGAATCGTATGGATTTGTCACTTTTGGTTATAACCAAGGGCTTGACTAAGACAGGAGATGATTATGAAGTAAAAGCAGCTCATGTTGAACTTGCAGAGCGGATGCGCAAGAGAGATGCTGCTACTGCTCCTAATGTGGGAGATCGTGTCCCTTATGTGATTATCAAAGCTGCTAAAGGTGCCAAGGCTTATGAGAAGTCGGAGGATCCCATCTATGTGCTAGAGAATAACATCCCAATTGATCCTCAGTACTATCTGGAGAATCAAATTAGCAAGCCACTGTTAAGGATTTTTGAACCCATCTTGAAAAATGCTAGCAAGGAACTTCTACATGGTGACCACACAAGATCTATCTCTATATCCACTCCATCAAACAGTGGCATAATGAAATTTGCTAAGAAGAAGCTAAGTTGCATTGGCTGCAAAGCAATAATTAGCAATGCAGATCGTCCAATCTGCTCGCATTGCAGTGGAAGGGAAGCTGAACTTTACTGCAAGACAGTAGATAATGTTTCTGAGCTGGAGATGCTTTTTGGGAGACTATGGACACAGTGTCAGGAGTGTCAGGGCTCACTCCATCAAGATGTTCTTTGCACAAGTCGTGATTGTCCTATATTTTACCGAAGAAAGAAGGCGCAGAAAGACATGGCTGAAGCAAGGCTGCAGCTAGACAGATGGAGCTTCTAA 3267 0.4236 MNRNGNGRKRPPQASQPSPAQHSKVQVFSQEDEFDEDVFLDQNLITEEEESLILRDIEERQALADRLAKWTRPPLSPGFLSFSQNILFQQLEIDYVIGESHKALLPNSSGPAAIIRIFGVTKEGHSVCCHVHGFEPYFYISCPPGMGPDDISRFHQILEGRMREANRNSNVPKFVRRVELVQRRSIMYYQQQSAHPFLKIVVALPTMVASCRGILDRGIQIDGLGMKSFMTYESNVLFALRFMIDCNIVGGNWIEVPAGKYKRKTKNISYCQLEFDCLYSELISHAAEGEFSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQIANLVTLQGEGQPCIRNVMTLKSCSPIVGVDVMSFDTEREVLLAWRDFIREVDPDIIIGYNICKFDLPYLIERAETLKIAEFPILGRIRNSRVRVKDTTFSSRQYGTRESKEVTVEGRVQFDLLQAMQRDYKLSSYSLNSVSAHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMYIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNVKHAGSEQGTFEGATVLEAKSGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTAEDVRKLSLPPECVSKTPSGETFVKATLQKGILPEILEELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTTGGYKHNAEVIYGDTDSVMVQFGVPSVEEAMTFGREAAEYISGTFTKPIKLEFEKVYYPYLLISKKRYAGLLWTKSENFDKMDTKGIETVRRDNCLLVKNLVNECLHKILIDRDIPGAVQYVKNTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYEKSEDPIYVLENNIPIDPQYYLENQISKPLLRIFEPILKNASKELLHGDHTRSISISTPSNSGIMKFAKKKLSCIGCKAIISNADRPICSHCSGREAELYCKTVDNVSELEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEARLQLDRWSF* 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02073 1088 FunFam DNA polymerase 92 267 - -
Pte1g02073 1088 SUPERFAMILY Ribonuclease H-like 112 534 IPR012337 -
Pte1g02073 1088 Gene3D Palm domain of DNA polymerase 570 799 IPR023211 -
Pte1g02073 1088 Gene3D DNA Polymerase, chain B, domain 1 91 268 - -
Pte1g02073 1088 MobiDBLite consensus disorder prediction 1 27 - -
Pte1g02073 1088 FunFam DNA polymerase 816 972 - -
Pte1g02073 1088 Gene3D - 816 971 IPR042087 -
Pte1g02073 1088 NCBIfam DNA polymerase (pol2) 240 959 - -
Pte1g02073 1088 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 74 1054 - -
Pte1g02073 1088 FunFam DNA polymerase 643 695 - -
Pte1g02073 1088 Pfam DNA polymerase family B, exonuclease domain 121 464 IPR006133 -
Pte1g02073 1088 SUPERFAMILY DNA/RNA polymerases 553 964 IPR043502 -
Pte1g02073 1088 CDD DNA_polB_delta_exo 292 520 - -
Pte1g02073 1088 Gene3D - 296 514 IPR036397 GO:0003676
Pte1g02073 1088 ProSitePatterns DNA polymerase family B signature. 742 750 IPR017964 GO:0000166|GO:0003676
Pte1g02073 1088 Pfam DNA polymerase family B 528 961 IPR006134 GO:0000166|GO:0003677
Pte1g02073 1088 CDD POLBc_delta 569 962 - -
Pte1g02073 1088 Gene3D Helix hairpin bin 643 695 - -
Pte1g02073 1088 PRINTS DNA-directed DNA-polymerase family B signature 740 748 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pte1g02073 1088 PRINTS DNA-directed DNA-polymerase family B signature 679 691 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pte1g02073 1088 PRINTS DNA-directed DNA-polymerase family B signature 587 600 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pte1g02073 1088 FunFam DNA polymerase 335 568 - -
Pte1g02073 1088 Pfam C4-type zinc-finger of DNA polymerase delta 998 1069 IPR025687 -
Pte1g02073 1088 SMART polmehr3 295 754 IPR006172 GO:0000166|GO:0003676|GO:0003887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02073 Pte-Chr1 41888475 41910498 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02073 7 1089 Core DNA Replication Machinery Family AT5G63960 81.793 0.0 1876
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02073 K02327 - qsa:O6P43_030308 1953.33