Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02057 ATGATTCGAAGCTGGTTGGGCTCATTATCTGGTGATATTGATTTTTTTTTCGTCTTTGGGTCGGTTTGTGATGACAGCAATATGCGTACCAAGTCGCGAACAGCTGTGAAACTTAACAAGGAAGTCCGTAAACACTCAATTTCCAGAACTAGTAAATCGGAGGGAGCTGATTTTTTGCCATTGGAAGGAGGTCCAGGTCGCAAACTAGAAGTACAGAAACCGTTGGAAGATAATGCTACAGTCTTATACGTTGGTCGAATTCCAGATGGCTTCACTGAGGAAGGGATGAGAGATTTTTTTAAAGAATTCGGTACTGTCAAGAGATTAAGAATTTCAAGAAGCAGAAAGACGGGAAAATCAAAGCATTATGGCTTCGTTGAATTTGAATCTCCCATGGTGGCAAAAATTGTTGCTGAAACCATGAACAATCATCTTGTGGAAAATCACCTGTTGCAGGTCCACCCAATTCCTACCGAGCGTGTTCATCCCAACTTGTAA 498 0.4157 MIRSWLGSLSGDIDFFFVFGSVCDDSNMRTKSRTAVKLNKEVRKHSISRTSKSEGADFLPLEGGPGRKLEVQKPLEDNATVLYVGRIPDGFTEEGMRDFFKEFGTVKRLRISRSRKTGKSKHYGFVEFESPMVAKIVAETMNNHLVENHLLQVHPIPTERVHPNL* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02057 165 SMART rrm1_1 81 154 IPR000504 GO:0003723
Pte1g02057 165 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 151 IPR000504 GO:0003723
Pte1g02057 165 CDD RRM_NIFK_like 81 154 - -
Pte1g02057 165 SUPERFAMILY RNA-binding domain, RBD 65 160 IPR035979 GO:0003676
Pte1g02057 165 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 158 IPR000504 GO:0003723
Pte1g02057 165 Gene3D - 22 161 IPR012677 -
Pte1g02057 165 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 33 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02057 Pte-Chr1 41747867 41751035 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02057 82 163 Eukaryotic Initiation Factors Gene Family AT2G36660 30.952 4.49e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02057 K14838 - cave:132189839 176.022